HomozgosityMapper pedigree

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Genome-wide homozygosity in Tutorial_SNP - hi2

55712 sites Max homozygosity score: 1200

Click on a chromosome to zoom in.

Broad – use this when you expect some genetic heterogeneity

score	chr	from (bp)	to (bp)	length (bp)	build 37
1200	8	41807750	49289257	7481508	Region	Genotypes
1200	7	29944869	36547689	6602821	Region	Genotypes
1089	7	71726874	77217474	5490601	Region	Genotypes
977	19	36911000	38317388	1406389	Region	Genotypes
887	7	71358914	71449469	90556	Region	Genotypes
863	17	45063349	45755810	692462	Region	Genotypes
809	2	96195730	99996165	3800436	Region	Genotypes
754	1	147148304	150093628	2945325	Region	Genotypes
733	14	66346942	68257485	1910544	Region	Genotypes
723	20	32482632	33640242	1157611	Region	Genotypes

Narrow – use this when all patients are from the same family

score	chr	from (bp)	to (bp)	length (bp)	build 37
1200	8	41807750	49289257	7481508	Region	Genotypes
1200	7	29944869	36547689	6602821	Region	Genotypes
1089	7	71726874	77217474	5490601	Region	Genotypes
977	19	36911000	38317388	1406389	Region	Genotypes
887	7	71358914	71449469	90556	Region	Genotypes
863	17	45063349	45755810	692462	Region	Genotypes
809	2	96195730	99996165	3800436	Region	Genotypes
754	1	147148304	150093628	2945325	Region	Genotypes
733	14	66346942	68257485	1910544	Region	Genotypes
723	20	32482632	33640242	1157611	Region	Genotypes

Homozyosity scores

Analysis settings

project_name	Tutorial_SNP (Change name)
analysis_name	hi2 (Change name)
analysis_description	hi1
max_block_length	6
max_score	1200
owner_login	melvo98
lower_limit	0
date	2023-10-18 00:00:00
cases	NA06993,NA07019
controls	NA07034,NA07056