HomozgosityMapper pedigree Login

Homozygosity on chromosome 1 in CLDN19 - non-default settings

39 sites Max homozygosity score: 5193
zoom in
genotypes
45060687 bp
Chromosome 1
48700325 bp

You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot.

Broad – use this when you expect some genetic heterogeneity

scorechrfrom (bp)to (bp)length (bp)build 37
4800145060687487003253639639RegionGenotypes

Narrow – use this when all patients are from the same family

scorechrfrom (bp)to (bp)length (bp)build 37
480014506068745358527297841RegionGenotypes
3600145060687487003253639639RegionGenotypes

Options and Exports

Change threshold
Call GeneDistiller build 37
/
Create a BED file build 37
/
Homozyosity scores
Retrieve

Analysis settings

project_nameCLDN19 (Change name)
analysis_namenon-default settings (Change name)
max_block_length12
max_score5193
owner_logintutorial
lower_limit2
date2022-03-07 00:00:00
casesBAR-11-01,F48-8191,F49-8194,F50-8198,F51-8201,F52-8205,F68-BAR12d,F75-MG18d,F76-MG17-01
controlsF76-MG17-02,F76-MG17-03,F76-MG17-05,F76-MG17-06