Genome-wide homozygosity in CFS2 - CFS2_fam

max homozygosity score: 138
41630 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
13889207351592267085#3382#3385regiongenotypes
13689173788991872902#3371#3377regiongenotypes
124261059182310812264#35965#35969regiongenotypes
123234917006549316284#33206#33210regiongenotypes
118484440378670694#44303#44305regiongenotypes
115234879135349170065#33198#33206regiongenotypes
113185135790451619087#21958#21961regiongenotypes
11275266783852677405#52059#52061regiongenotypes
112185171771451863867#21967#21971regiongenotypes
narrow - use this when all patients are in the same family
13889207351592267085#3382#3385regiongenotypes
13689173788991872902#3371#3377regiongenotypes
124261059182310812264#35965#35969regiongenotypes
123234917006549316284#33206#33210regiongenotypes
118484440378670694#44303#44305regiongenotypes
115234879135349170065#33198#33206regiongenotypes
113185135790451619087#21958#21961regiongenotypes
11275266783852677405#52059#52061regiongenotypes
112185171771451863867#21967#21971regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length15
max_score138
user_loginjncldwll1
homogeneity_requiredhomogeneity required
lower_limit0
date2013-08-08 00:00:00
exclusion_length-1
casesJC104,JC132,JC134,JC136,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores