Homozygosity on chromosome 2 in jen444 - Basic analysis

max homozygosity score: 90
 6 markers
49522684 bp chromosome 2 50259063 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
7524952268450259063#1860#1868regiongenotypes
narrow - use this when all patients are in the same family
7524952268450022247#1860#1866regiongenotypes
7224992931350259063#1864#1868regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_namejen444change name
analysis_nameBasic analysischange name
max_block_length15
max_score90
user_loginLrybaczyk
casesOSA10,OSA3,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC11,AKC12,AKC2,AKC5,AKC9


retrieve homozyosity scores