Homozygosity on chromosome 20 in jen444 - Basic analysis

max homozygosity score: 90
13 markers
23849423 bp chromosome 20 24704914 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
79202384942324704914#16431#16446regiongenotypes
narrow - use this when all patients are in the same family
79202428413224704914#16439#16446regiongenotypes
77202384942324073446#16431#16433regiongenotypes
77202415012024284132#16435#16439regiongenotypes
76202407344624150120#16433#16435regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_namejen444change name
analysis_nameBasic analysischange name
max_block_length15
max_score90
user_loginLrybaczyk
casesOSA10,OSA3,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC11,AKC12,AKC2,AKC5,AKC9


retrieve homozyosity scores