Homozygosity on chromosome 22 in jen444 - Basic analysis

max homozygosity score: 90
 4 markers
4439679 bp chromosome 22 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
772244396794576920#17529#17532regiongenotypes
narrow - use this when all patients are in the same family
772244396794576920#17529#17532regiongenotypes
752245341754576920#17531#17532regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_namejen444change name
analysis_nameBasic analysischange name
max_block_length15
max_score90
user_loginLrybaczyk
casesOSA10,OSA3,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC11,AKC12,AKC2,AKC5,AKC9


retrieve homozyosity scores