Genome-wide homozygosity in jen444 - Basic analysis

max homozygosity score: 90
16674 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
9033517296037459889#2589#2620regiongenotypes
9047087041973811402#4127#4165regiongenotypes
9047399937475824884#4166#4187regiongenotypes
9051022619013801889#4453#4498regiongenotypes
90132283493723971099#11487#11504regiongenotypes
90164163483942589156#13912#13920regiongenotypes
90202558611328503487#16466#16520regiongenotypes
9022904123010474159#17581#17602regiongenotypes
90224851006450831663#17991#18031regiongenotypes
902432899245666265#18950#18973regiongenotypes
9025381316712665425#19599#19690regiongenotypes
90361240633814040409#25046#25065regiongenotypes
90372486625027240275#25555#25594regiongenotypes
90372810702229487949#25609#25636regiongenotypes
8961429945816258930#5617#5645regiongenotypes
8964008299045708756#5943#5976regiongenotypes
8815954296460906539#669#688regiongenotypes
8853538497037921975#4782#4805regiongenotypes
8854699003048608611#4922#4942regiongenotypes
8884462311746350788#7812#7833regiongenotypes
88101101720813520959#8904#8934regiongenotypes
88283010708032059012#21576#21602regiongenotypes
8726362178666890827#2011#2047regiongenotypes
8726807100170963423#2063#2092regiongenotypes
872232591875958199#17517#17552regiongenotypes
8615515989355721053#611#619regiongenotypes
8643026722432042029#3665#3686regiongenotypes
86132675865927079420#11546#11550regiongenotypes
86163922613940655660#13886#13904regiongenotypes
86253975099340912144#20057#20070regiongenotypes
85243738644139629213#19433#19464regiongenotypes
8494667381248671086#8625#8647regiongenotypes
843496079989749248#24138#24141regiongenotypes
8354863704548708572#4943#4945regiongenotypes
83201972212720396381#16362#16372regiongenotypes
83282272457723652227#21484#21492regiongenotypes
83293386010335691337#22123#22151regiongenotypes
83342346283024504688#24296#24314regiongenotypes
83361432127815964413#25069#25084regiongenotypes
83382446741524621413#25977#25979regiongenotypes
8216173884462703625#698#708regiongenotypes
8241295619914140022#3484#3500regiongenotypes
82565012299603848#4415#4445regiongenotypes
82165091704351558298#14032#14045regiongenotypes
82341663020618100683#24220#24230regiongenotypes
82382285076223900128#25964#25972regiongenotypes
8177122512072899861#7199#7220regiongenotypes
81132136329322268402#11460#11474regiongenotypes
81224466032046401928#17948#17966regiongenotypes
81232761255928066589#18553#18559regiongenotypes
8051644075318196237#4543#4564regiongenotypes
8061703922518193815#5651#5665regiongenotypes
8063544993436590724#5881#5896regiongenotypes
80201751014118886469#16341#16353regiongenotypes
80234212659742342246#18761#18767regiongenotypes
7971026452210677255#6480#6490regiongenotypes
79144721481848388641#12565#12583regiongenotypes
79202384942324704914#16431#16446regiongenotypes
79213280420633304807#17228#17234regiongenotypes
79322754162228139491#23518#23523regiongenotypes
79361936994819993216#25121#25131regiongenotypes
78785461269941989#6456#6475regiongenotypes
7894482904345451780#8598#8607regiongenotypes
78102861152529882451#9069#9080regiongenotypes
78122197895522485305#10656#10665regiongenotypes
78133205577432412417#11629#11638regiongenotypes
78135210115152675362#11889#11892regiongenotypes
78283459503134801243#21638#21641regiongenotypes
7731893955019317603#2445#2451regiongenotypes
7741481685015180516#3506#3512regiongenotypes
77759280316917459#6427#6439regiongenotypes
77102340387124048734#9024#9032regiongenotypes
77105998299260939742#9455#9464regiongenotypes
77135346759756183842#11898#11924regiongenotypes
77161295415814908985#13565#13582regiongenotypes
77181713680118952139#15097#15111regiongenotypes
77202863213929900517#16523#16536regiongenotypes
77214118942942657951#17335#17353regiongenotypes
77234033069641217453#18732#18747regiongenotypes
77261892661020243802#20458#20469regiongenotypes
77283482022935451038#21642#21652regiongenotypes
77293153957532781334#22104#22111regiongenotypes
76154605816780390#24#33regiongenotypes
7616313536865014928#711#720regiongenotypes
7632946550230287124#2523#2534regiongenotypes
76547961535932893#4397#4412regiongenotypes
7671103087711893189#6494#6506regiongenotypes
7686456210464827059#8053#8059regiongenotypes
7695787260958487289#8740#8750regiongenotypes
76144312391043608790#12503#12509regiongenotypes
76205301072553806203#16782#16792regiongenotypes
76362234172622534595#25157#25159regiongenotypes
7515474750455159893#606#611regiongenotypes
7524952268450259063#1860#1868regiongenotypes
7556453491866068054#5128#5145regiongenotypes
7558312714484813306#5368#5380regiongenotypes
75362279506923062005#25164#25166regiongenotypes
7447023626370870419#4120#4127regiongenotypes
749992943010383390#8233#8239regiongenotypes
74135955423361236909#11962#11977regiongenotypes
74254098904141061834#20072#20074regiongenotypes
742736457584856991#20717#20728regiongenotypes
74361180785512084033#25036#25039regiongenotypes
74382488823125843547#25985#25996regiongenotypes
73151060975460581#18#24regiongenotypes
7319597776996907259#1093#1101regiongenotypes
7326772252168071001#2058#2063regiongenotypes
73333004713903071#2280#2286regiongenotypes
7341552697216313340#3517#3526regiongenotypes
73683303388499991#5540#5544regiongenotypes
7377807511978663882#7300#7306regiongenotypes
7384916042149484623#7877#7881regiongenotypes
73102404873424750145#9032#9036regiongenotypes
731361672157709145#11274#11293regiongenotypes
73132707942027260533#11550#11554regiongenotypes
73144222211143123910#12491#12503regiongenotypes
7317929761310460665#14264#14272regiongenotypes
73171419023614786481#14329#14334regiongenotypes
73172037861221494875#14406#14419regiongenotypes
73174363806443844500#14686#14690regiongenotypes
73174384450044187017#14690#14694regiongenotypes
73202039638120703082#16372#16381regiongenotypes
733474877398075202#24111#24118regiongenotypes
73372996535330369365#25645#25653regiongenotypes
72142186525106097#11#18regiongenotypes
7215369808253788646#586#588regiongenotypes
7222186331322171160#1545#1551regiongenotypes
7234583137646129799#2722#2726regiongenotypes
7243204202932463712#3686#3690regiongenotypes
7244056356841093924#3781#3791regiongenotypes
72956025708789349#8198#8222regiongenotypes
72101039331810879097#8894#8901regiongenotypes
72114112507541830089#9986#9999regiongenotypes
721253865876897931#10455#10468regiongenotypes
72135926292959554233#11959#11962regiongenotypes
72171046066510686554#14272#14274regiongenotypes
72174345053143638064#14683#14686regiongenotypes
72181023230211347790#15032#15042regiongenotypes
72222221350323338214#17719#17731regiongenotypes
72254091214440989041#20070#20072regiongenotypes
72264004328041127711#20693#20705regiongenotypes
723038703004400833#22283#22292regiongenotypes
723642923934687203#24955#24962regiongenotypes
72362336320223852809#25171#25179regiongenotypes
72371015028611009174#25385#25393regiongenotypes
narrow - use this when all patients are in the same family
9033647626237459889#2603#2620regiongenotypes
9047147780073303755#4134#4159regiongenotypes
9047399937475482630#4166#4184regiongenotypes
9051117998612409662#4467#4483regiongenotypes
90132283493723706280#11487#11501regiongenotypes
90164163483942589156#13912#13920regiongenotypes
90202587916228389960#16468#16517regiongenotypes
9022904123010474159#17581#17602regiongenotypes
90224988000550831663#18014#18031regiongenotypes
902440024435666265#18963#18973regiongenotypes
902538131679568442#19599#19650regiongenotypes
90361250287214040409#25048#25065regiongenotypes
90372486625025866704#25555#25569regiongenotypes
90372591523127240275#25571#25594regiongenotypes
90372810702229412203#25609#25633regiongenotypes
8961429945815967410#5617#5641regiongenotypes
8964213378845708756#5954#5976regiongenotypes
8815981101360732945#673#687regiongenotypes
8853538497035995970#4782#4787regiongenotypes
8854801852248608611#4935#4942regiongenotypes
8884527558245582615#7823#7826regiongenotypes
88101101720813520959#8904#8934regiongenotypes
88283010708031543496#21576#21591regiongenotypes
8726362178665563140#2011#2034regiongenotypes
8726899884569610342#2072#2076regiongenotypes
8727017922070963423#2084#2092regiongenotypes
872249317765958199#17537#17552regiongenotypes
87224874647148999252#17995#18003regiongenotypes
8615515989355721053#611#619regiongenotypes
8643108797932042029#3678#3686regiongenotypes
86132675865927079420#11546#11550regiongenotypes
86163922613940655660#13886#13904regiongenotypes
86253975099340912144#20057#20070regiongenotypes
85243817909939629213#19445#19464regiongenotypes
8494808653948671086#8637#8647regiongenotypes
843496079989749248#24138#24141regiongenotypes
8351280855313801889#4488#4498regiongenotypes
8354863704548708572#4943#4945regiongenotypes
83201972212720396381#16362#16372regiongenotypes
832232591873583010#17517#17521regiongenotypes
83243738644137829955#19433#19441regiongenotypes
83282272457723652227#21484#21492regiongenotypes
83293386010335156438#22123#22144regiongenotypes
83342346283024272385#24296#24309regiongenotypes
83361432127815782599#25069#25081regiongenotypes
83382446741524621413#25977#25979regiongenotypes
8216173884462703625#698#708regiongenotypes
8241355800714140022#3496#3500regiongenotypes
82586717249603848#4436#4445regiongenotypes
82165091704351515253#14032#14044regiongenotypes
82341708027918100683#24224#24230regiongenotypes
82382285076223900128#25964#25972regiongenotypes
8126567002366528487#2035#2044regiongenotypes
8141295619913073733#3484#3487regiongenotypes
8177122512072899861#7199#7220regiongenotypes
81132136329322268402#11460#11474regiongenotypes
81224466032045566263#17948#17957regiongenotypes
81232761255928066589#18553#18559regiongenotypes
8051644075317775037#4543#4558regiongenotypes
8061703922518193815#5651#5665regiongenotypes
8063544993436590724#5881#5896regiongenotypes
80201751014118886469#16341#16353regiongenotypes
802235830104439679#17521#17529regiongenotypes
80234212659742226743#18761#18763regiongenotypes
7943026722430678029#3665#3671regiongenotypes
7947087041971428662#4127#4133regiongenotypes
7964069568641942601#5944#5952regiongenotypes
7971026452210677255#6480#6490regiongenotypes
79144785173748388641#12575#12583regiongenotypes
79202428413224704914#16439#16446regiongenotypes
79202838996028503487#16517#16520regiongenotypes
79213280420633304807#17228#17234regiongenotypes
79322754162227639299#23518#23520regiongenotypes
79361936994819993216#25121#25131regiongenotypes
7833549038336071787#2592#2599regiongenotypes
7847330375573811402#4159#4165regiongenotypes
7851022619010574896#4453#4458regiongenotypes
7851783185018196237#4559#4564regiongenotypes
7854699003047460682#4922#4929regiongenotypes
78785461269172503#6456#6463regiongenotypes
7894482904345451780#8598#8607regiongenotypes
78102861152529882451#9069#9080regiongenotypes
78122243795022485305#10663#10665regiongenotypes
78133205577432231330#11629#11634regiongenotypes
78135210115152675362#11889#11892regiongenotypes
78224556626345956234#17957#17962regiongenotypes
78251111974711412761#19670#19675regiongenotypes
78283167326331881499#21593#21598regiongenotypes
78283459503134801243#21638#21641regiongenotypes
78342427238524504688#24309#24314regiongenotypes
7726961034270179220#2076#2084regiongenotypes
7731914799619317603#2449#2451regiongenotypes
7733517296035490383#2589#2592regiongenotypes
7733607178736476262#2599#2603regiongenotypes
7741314669613304172#3489#3492regiongenotypes
7741481685015180516#3506#3512regiongenotypes
7743070245831050017#3672#3677regiongenotypes
77576083098086546#4424#4428regiongenotypes
7751081778611179986#4463#4467regiongenotypes
7753608187437128092#4788#4800regiongenotypes
77759280316917459#6427#6439regiongenotypes
77102340387124048734#9024#9032regiongenotypes
77105998299260939742#9455#9464regiongenotypes
77132370628023971099#11501#11504regiongenotypes
77135346759756183842#11898#11924regiongenotypes
77144727800147851737#12566#12575regiongenotypes
77161413645014908985#13573#13582regiongenotypes
77181772527318358166#15099#15106regiongenotypes
77202384942324073446#16431#16433regiongenotypes
77202415012024284132#16435#16439regiongenotypes
77202903952029900517#16527#16536regiongenotypes
77214118942942657951#17335#17353regiongenotypes
772244396794576920#17529#17532regiongenotypes
77224595623446401928#17962#17966regiongenotypes
77224919138549453553#18006#18009regiongenotypes
77224945355349880005#18009#18014regiongenotypes
77234033069641217453#18732#18747regiongenotypes
772435215043723520#18955#18958regiongenotypes
77251206497812665425#19683#19690regiongenotypes
77261892661019169037#20458#20460regiongenotypes
77283482022935451038#21642#21652regiongenotypes
77293153957532781334#22104#22111regiongenotypes
76154605816780390#24#33regiongenotypes
7616416974865014928#716#720regiongenotypes
7626652848766890827#2044#2047regiongenotypes
7626838417268998845#2065#2072regiongenotypes
7631905089819147996#2447#2449regiongenotypes
7632946550230287124#2523#2534regiongenotypes
7641307373313146696#3487#3489regiongenotypes
7641339205913558007#3494#3496regiongenotypes
7647549197675824884#4185#4187regiongenotypes
76547961535932893#4397#4412regiongenotypes
76568541157067664#4417#4420regiongenotypes
76570676647608309#4420#4424regiongenotypes
7651240966212808553#4483#4488regiongenotypes
7671103087711288059#6494#6498regiongenotypes
7684558261546350788#7826#7833regiongenotypes
7686456210464827059#8053#8059regiongenotypes
7694667381247793546#8625#8632regiongenotypes
7695787260958487289#8740#8750regiongenotypes
76133223133032412417#11634#11638regiongenotypes
76144312391043608790#12503#12509regiongenotypes
76161312822814119448#13566#13572regiongenotypes
76202407344624150120#16433#16435regiongenotypes
76202558611325879162#16466#16468regiongenotypes
76205301072553806203#16782#16792regiongenotypes
76224899925249191385#18003#18006regiongenotypes
7625962096610160224#19651#19654regiongenotypes
76251016022410399713#19654#19657regiongenotypes
76251039971310856776#19657#19663regiongenotypes
76251086430210931766#19664#19666regiongenotypes
76251093176611051524#19666#19668regiongenotypes
76251141276111821186#19675#19680regiongenotypes
76251182945812064978#19681#19683regiongenotypes
76283188149931986276#21598#21600regiongenotypes
76283198627632059012#21600#21602regiongenotypes
76293515643835691337#22144#22151regiongenotypes
76361240633812502872#25046#25048regiongenotypes
76361578259915964413#25081#25084regiongenotypes
76362234172622534595#25157#25159regiongenotypes
76372941220329487949#25633#25636regiongenotypes
7515474750455159893#606#611regiongenotypes
7524952268450022247#1860#1866regiongenotypes
7556453491866068054#5128#5145regiongenotypes
7558312714484813306#5368#5380regiongenotypes
7561596741016258930#5641#5645regiongenotypes
75791725039409477#6463#6466regiongenotypes
7571140158011822336#6499#6505regiongenotypes
75122197895522148417#10656#10658regiongenotypes
75165106990251558298#14036#14045regiongenotypes
75181848442718952139#15107#15111regiongenotypes
75202863213928765878#16523#16525regiongenotypes
75234215711542342246#18762#18767regiongenotypes
75322763289628139491#23519#23523regiongenotypes
75341675039117080279#24221#24224regiongenotypes
75362279506923062005#25164#25166regiongenotypes
7416313536864169748#711#716regiongenotypes
7447023626370870419#4120#4127regiongenotypes
7453712809237406702#4800#4803regiongenotypes
7453740670237921975#4803#4805regiongenotypes
7454763012248018522#4931#4935regiongenotypes
74792964159941989#6465#6475regiongenotypes
7484505255945204995#7818#7820regiongenotypes
749992943010383390#8233#8239regiongenotypes
7494779354648086539#8632#8637regiongenotypes
74122214841722276674#10658#10661regiongenotypes
74122227667422437950#10661#10663regiongenotypes
74135984578360776775#11966#11971regiongenotypes
74254098904141061834#20072#20074regiongenotypes
74261945376320173488#20463#20468regiongenotypes
742736457584856991#20717#20728regiongenotypes
74361180785512084033#25036#25039regiongenotypes
74382488823125843547#25985#25996regiongenotypes
73151060975460581#18#24regiongenotypes
7316060513860906539#686#688regiongenotypes
7319597776996907259#1093#1101regiongenotypes
7326772252168071001#2058#2063regiongenotypes
73333004713903071#2280#2286regiongenotypes
7341552697216313340#3517#3526regiongenotypes
73683303388499991#5540#5544regiongenotypes
7377807511978663882#7300#7306regiongenotypes
7384916042149484623#7877#7881regiongenotypes
73102404873424750145#9032#9036regiongenotypes
731361672157709145#11274#11293regiongenotypes
73132707942027260533#11550#11554regiongenotypes
73135966870559845783#11963#11966regiongenotypes
73136077677561236909#11971#11977regiongenotypes
73144222211143123910#12491#12503regiongenotypes
7317929761310460665#14264#14272regiongenotypes
73171419023614786481#14329#14334regiongenotypes
73172037861221494875#14406#14419regiongenotypes
73174363806443844500#14686#14690regiongenotypes
73174384450044187017#14690#14694regiongenotypes
73202039638120703082#16372#16381regiongenotypes
73261965243620243802#20465#20469regiongenotypes
733474877398075202#24111#24118regiongenotypes
73372996535330369365#25645#25653regiongenotypes
72142186525106097#11#18regiongenotypes
7215369808253788646#586#588regiongenotypes
7222186331322171160#1545#1551regiongenotypes
7224992931350259063#1864#1868regiongenotypes
7234583137646129799#2722#2726regiongenotypes
7243204202932463712#3686#3690regiongenotypes
7244056356841093924#3781#3791regiongenotypes
7271178581311893189#6504#6506regiongenotypes
72956025708789349#8198#8222regiongenotypes
72101039331810879097#8894#8901regiongenotypes
72114112507541830089#9986#9999regiongenotypes
721253865876897931#10455#10468regiongenotypes
72135926292959554233#11959#11962regiongenotypes
72171046066510686554#14272#14274regiongenotypes
72174345053143638064#14683#14686regiongenotypes
72181023230211347790#15032#15042regiongenotypes
72222221350323338214#17719#17731regiongenotypes
72254091214440989041#20070#20072regiongenotypes
72264004328041127711#20693#20705regiongenotypes
723038703004400833#22283#22292regiongenotypes
723642923934687203#24955#24962regiongenotypes
72362336320223852809#25171#25179regiongenotypes
72371015028611009174#25385#25393regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_namejen444change name
analysis_nameBasic analysischange name
max_block_length15
max_score90
user_loginLrybaczyk
casesOSA10,OSA3,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC11,AKC12,AKC2,AKC5,AKC9


retrieve homozyosity scores