Homozygosity on chromosome 20 in Jen2 - Jen22

max homozygosity score: 210
3 markers
19722127 bp chromosome 20 19979247 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
173201972212719979247#16362#16364regiongenotypes
narrow - use this when all patients are in the same family
173201972212719979247#16362#16364regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameJen2change name
analysis_nameJen22change name
analysis_descriptionTesting
max_block_length15
max_score210
user_loginLrybaczyk
homogeneity_requiredhomogeneity required
casesOFR1,OFR2,OFR3,OFR4,OSA1,OSA10,OSA11,OSA2,OSA3,OSA4,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC10,AKC11,AKC12,AKC2,AKC4,AKC5,AKC6,AKC8,AKC9


retrieve homozyosity scores