Homozygosity on chromosome 29 in Jen2 - Jen22

max homozygosity score: 210
3 markers
34625930 bp chromosome 29 34902005 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
180293462593034902005#22135#22140regiongenotypes
narrow - use this when all patients are in the same family
180293462593034902005#22135#22140regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameJen2change name
analysis_nameJen22change name
analysis_descriptionTesting
max_block_length15
max_score210
user_loginLrybaczyk
homogeneity_requiredhomogeneity required
casesOFR1,OFR2,OFR3,OFR4,OSA1,OSA10,OSA11,OSA2,OSA3,OSA4,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC10,AKC11,AKC12,AKC2,AKC4,AKC5,AKC6,AKC8,AKC9


retrieve homozyosity scores