Genome-wide homozygosity in Jen2 - Jen22

max homozygosity score: 210
16674 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
2102538131679568442#19599#19650regiongenotypes
20964213378845084289#5954#5968regiongenotypes
20815981101360732945#673#687regiongenotypes
2072249317765958199#17537#17552regiongenotypes
20554801852248608611#4935#4942regiongenotypes
203243738644137829955#19433#19441regiongenotypes
20226362178665209708#2011#2029regiongenotypes
20241355800714140022#3496#3500regiongenotypes
20141295619913073733#3484#3487regiongenotypes
19953538497035995970#4782#4787regiongenotypes
19864508428945708756#5968#5976regiongenotypes
198251111974711412761#19670#19675regiongenotypes
19741314669613304172#3489#3492regiongenotypes
19743108797932042029#3678#3686regiongenotypes
1972440024435179711#18963#18968regiongenotypes
197251206497812665425#19683#19690regiongenotypes
19641307373313146696#3487#3489regiongenotypes
19641339205913558007#3494#3496regiongenotypes
19663567934736590724#5887#5896regiongenotypes
19625962096610160224#19651#19654regiongenotypes
196251016022410399713#19654#19657regiongenotypes
196251039971310856776#19657#19663regiongenotypes
196251086430210931766#19664#19666regiongenotypes
196251093176611051524#19666#19668regiongenotypes
196251141276111821186#19675#19680regiongenotypes
196251182945812064978#19681#19683regiongenotypes
196372648338826585762#25580#25583regiongenotypes
19554699003047460682#4922#4929regiongenotypes
19416173884462703625#698#708regiongenotypes
19427017922070702292#2084#2088regiongenotypes
194586717249603848#4436#4445regiongenotypes
19484527558245582615#7823#7826regiongenotypes
194342346283024272385#24296#24309regiongenotypes
194361325750213742937#25056#25062regiongenotypes
19315515989355601045#611#616regiongenotypes
19216313536864169748#711#716regiongenotypes
192243843443839388088#19449#19462regiongenotypes
192361294139713257502#25050#25056regiongenotypes
192372591523126140552#25571#25573regiongenotypes
19126961034270179220#2076#2084regiongenotypes
19154763012248018522#4931#4935regiongenotypes
1912232591873583010#17517#17521regiongenotypes
19063544993435650404#5881#5886regiongenotypes
1902235830104439679#17521#17529regiongenotypes
18964138744841942601#5948#5952regiongenotypes
189133205577432231330#11629#11634regiongenotypes
189163922613940162915#13886#13895regiongenotypes
189225039431350562423#18024#18027regiongenotypes
189372614055226483388#25573#25580regiongenotypes
18826899884569610342#2072#2076regiongenotypes
188135210115152675362#11889#11892regiongenotypes
188372684593726927992#25586#25589regiongenotypes
18751022619010574896#4453#4458regiongenotypes
187102340387124048734#9024#9032regiongenotypes
187133223133032412417#11634#11638regiongenotypes
187222221350323338214#17719#17731regiongenotypes
187225056242350696333#18027#18029regiongenotypes
187251328219913469369#19701#19704regiongenotypes
187372658576226845937#25583#25586regiongenotypes
18653608187437128092#4788#4800regiongenotypes
18516955818071034177#764#779regiongenotypes
185224988000549945180#18014#18016regiongenotypes
185372898985429412203#25624#25633regiongenotypes
18451081778611179986#4463#4467regiongenotypes
184956025707842960#8198#8212regiongenotypes
1842451797115306144#18968#18970regiongenotypes
184361374293714040409#25062#25065regiongenotypes
18343077993931050017#3674#3677regiongenotypes
18343204202932463712#3686#3690regiongenotypes
18347186691672498908#4139#4147regiongenotypes
183132293759223487992#11490#11495regiongenotypes
183201751014118886469#16341#16353regiongenotypes
1832244900764576920#17530#17532regiongenotypes
183372825558228553158#25611#25617regiongenotypes
182759767526917459#6428#6439regiongenotypes
1821253865876897931#10455#10468regiongenotypes
182151393663914897554#12849#12855regiongenotypes
182151492288415062251#12856#12859regiongenotypes
18116430966365014928#717#720regiongenotypes
18147412142074657367#4168#4176regiongenotypes
181151506225115116137#12859#12861regiongenotypes
181152415682824693515#12949#12954regiongenotypes
181282272457723339732#21484#21489regiongenotypes
181372873002228989854#25621#25624regiongenotypes
1805960384810161015#4445#4451regiongenotypes
18053712809237406702#4800#4803regiongenotypes
18053740670237921975#4803#4805regiongenotypes
18057991162881481856#5340#5348regiongenotypes
18084505255945204995#7818#7820regiongenotypes
180135475821256183842#11909#11924regiongenotypes
180293462593034902005#22135#22140regiongenotypes
17951205831912379889#4479#4482regiongenotypes
17993220016032890933#8446#8454regiongenotypes
179122243795022485305#10663#10665regiongenotypes
179133123447431500024#11612#11618regiongenotypes
179135346759754758212#11898#11909regiongenotypes
179172037861221230021#14406#14418regiongenotypes
179293515643835691337#22144#22151regiongenotypes
17841414002214816850#3500#3506regiongenotypes
17851195487412058319#4477#4479regiongenotypes
17884558261546350788#7826#7833regiongenotypes
1781939642875746928#15529#15542regiongenotypes
178205301072553806203#16782#16792regiongenotypes
178361240633812502872#25046#25048regiongenotypes
178372855315828632593#25617#25620regiongenotypes
17747399937474121420#4166#4168regiongenotypes
17754566144246072535#4907#4911regiongenotypes
17793289093333305226#8454#8457regiongenotypes
177101161633012248197#8913#8919regiongenotypes
1771247133925063696#10449#10452regiongenotypes
1771250636965386587#10452#10455regiongenotypes
1771965996317047983#15544#15549regiongenotypes
17619597776996907259#1093#1101regiongenotypes
17691976298822617041#8329#8344regiongenotypes
176101039331810879097#8894#8901regiongenotypes
176151358539513936639#12845#12849regiongenotypes
176214140843142275287#17341#17352regiongenotypes
176234042598141217453#18734#18747regiongenotypes
176264004328041127711#20693#20705regiongenotypes
176282523100825891851#21515#21522regiongenotypes
176342450468824619727#24314#24316regiongenotypes
176361180785512084033#25036#25039regiongenotypes
176361936994819639939#25121#25124regiongenotypes
17544122373941486937#3795#3801regiongenotypes
17554523049445661442#4901#4907regiongenotypes
17584916042149484623#7877#7881regiongenotypes
175101101720811256796#8904#8907regiongenotypes
175164016291540655660#13895#13904regiongenotypes
175202003563420396381#16365#16372regiongenotypes
175283130048131543496#21588#21591regiongenotypes
175293435221034625930#22131#22135regiongenotypes
17432335115824112831#2481#2487regiongenotypes
174122227667422437950#10661#10663regiongenotypes
174161419038414862812#13574#13581regiongenotypes
174263995472140043280#20691#20693regiongenotypes
174342461972724848449#24316#24319regiongenotypes
174372698088927240275#25590#25594regiongenotypes
173259727118932343#1378#1390regiongenotypes
17343026722430560504#3665#3668regiongenotypes
17343056050430613058#3668#3670regiongenotypes
17361440854314807396#5620#5624regiongenotypes
173983878858789349#8218#8222regiongenotypes
17392261704122832737#8344#8348regiongenotypes
173152134669022077933#12915#12923regiongenotypes
173152494956925556599#12961#12968regiongenotypes
173201972212719979247#16362#16364regiongenotypes
173224466032045099215#17948#17952regiongenotypes
17244056356841093924#3781#3791regiongenotypes
17251280855313516566#4488#4494regiongenotypes
17257881491579612824#5327#5337regiongenotypes
17296208031062132027#8799#8801regiongenotypes
172164163483942272257#13912#13916regiongenotypes
172181807715818358166#15102#15106regiongenotypes
172222333821423490792#17731#17733regiongenotypes
172251307768813194541#19697#19699regiongenotypes
17132255622923146400#2474#2480regiongenotypes
17196151847462080310#8792#8799regiongenotypes
171132358316423706280#11498#11501regiongenotypes
171164227225742383414#13916#13918regiongenotypes
171224509921545566263#17952#17957regiongenotypes
171251269820412917997#19691#19694regiongenotypes
171283513022035435799#21645#21651regiongenotypes
17022137713321650965#1540#1543regiongenotypes
17034037444240671896#2649#2655regiongenotypes
17044148693741675745#3801#3805regiongenotypes
17051168017211954874#4474#4477regiongenotypes
17077203509172489342#7210#7214regiongenotypes
17077248934272899861#7214#7220regiongenotypes
170214125086341408431#17336#17341regiongenotypes
170283459503134801243#21638#21641regiongenotypes
1703442299144795615#24057#24066regiongenotypes
169101284194913520959#8925#8934regiongenotypes
169224556626345652679#17957#17960regiongenotypes
169234123551041860159#18748#18755regiongenotypes
169283482022935130220#21642#21645regiongenotypes
169342508751525170631#24321#24324regiongenotypes
16847501274275482630#4180#4184regiongenotypes
16854503586545230494#4897#4901regiongenotypes
16863446277034874368#5868#5870regiongenotypes
16886456210464827059#8053#8059regiongenotypes
16896120853261392293#8787#8790regiongenotypes
168121777587718236555#10590#10597regiongenotypes
168122214841722276674#10658#10661regiongenotypes
168133150002431549297#11618#11620regiongenotypes
168224595623446401928#17962#17966regiongenotypes
168253194100932238364#19936#19943regiongenotypes
168361969483419909223#25125#25129regiongenotypes
narrow - use this when all patients are in the same family
2102538131679568442#19599#19650regiongenotypes
20964213378845084289#5954#5968regiongenotypes
20815981101360732945#673#687regiongenotypes
2072249317765958199#17537#17552regiongenotypes
20554801852248608611#4935#4942regiongenotypes
203243738644137829955#19433#19441regiongenotypes
20226362178665209708#2011#2029regiongenotypes
20241355800714140022#3496#3500regiongenotypes
20141295619913073733#3484#3487regiongenotypes
19953538497035995970#4782#4787regiongenotypes
19864508428945708756#5968#5976regiongenotypes
198251111974711412761#19670#19675regiongenotypes
19741314669613304172#3489#3492regiongenotypes
19743108797932042029#3678#3686regiongenotypes
1972440024435179711#18963#18968regiongenotypes
197251206497812665425#19683#19690regiongenotypes
19641307373313146696#3487#3489regiongenotypes
19641339205913558007#3494#3496regiongenotypes
19663567934736590724#5887#5896regiongenotypes
19625962096610160224#19651#19654regiongenotypes
196251016022410399713#19654#19657regiongenotypes
196251039971310856776#19657#19663regiongenotypes
196251086430210931766#19664#19666regiongenotypes
196251093176611051524#19666#19668regiongenotypes
196251141276111821186#19675#19680regiongenotypes
196251182945812064978#19681#19683regiongenotypes
196372648338826585762#25580#25583regiongenotypes
19554699003047460682#4922#4929regiongenotypes
19416173884462703625#698#708regiongenotypes
19427017922070702292#2084#2088regiongenotypes
194586717249603848#4436#4445regiongenotypes
19484527558245582615#7823#7826regiongenotypes
194342346283024272385#24296#24309regiongenotypes
194361325750213742937#25056#25062regiongenotypes
19315515989355601045#611#616regiongenotypes
19216313536864169748#711#716regiongenotypes
192243843443839388088#19449#19462regiongenotypes
192361294139713257502#25050#25056regiongenotypes
192372591523126140552#25571#25573regiongenotypes
19126961034270179220#2076#2084regiongenotypes
19154763012248018522#4931#4935regiongenotypes
1912232591873583010#17517#17521regiongenotypes
19063544993435650404#5881#5886regiongenotypes
1902235830104439679#17521#17529regiongenotypes
18964138744841942601#5948#5952regiongenotypes
189133205577432231330#11629#11634regiongenotypes
189163922613940162915#13886#13895regiongenotypes
189225039431350562423#18024#18027regiongenotypes
189372614055226483388#25573#25580regiongenotypes
18826899884569610342#2072#2076regiongenotypes
188135210115152675362#11889#11892regiongenotypes
188372684593726927992#25586#25589regiongenotypes
18751022619010574896#4453#4458regiongenotypes
187102340387124048734#9024#9032regiongenotypes
187133223133032412417#11634#11638regiongenotypes
187222221350323338214#17719#17731regiongenotypes
187225056242350696333#18027#18029regiongenotypes
187251328219913469369#19701#19704regiongenotypes
187372658576226845937#25583#25586regiongenotypes
18653608187437128092#4788#4800regiongenotypes
18516955818071034177#764#779regiongenotypes
185224988000549945180#18014#18016regiongenotypes
185372898985429412203#25624#25633regiongenotypes
18451081778611179986#4463#4467regiongenotypes
184956025707842960#8198#8212regiongenotypes
1842451797115306144#18968#18970regiongenotypes
184361374293714040409#25062#25065regiongenotypes
18343077993931050017#3674#3677regiongenotypes
18343204202932463712#3686#3690regiongenotypes
18347186691672498908#4139#4147regiongenotypes
183132293759223487992#11490#11495regiongenotypes
183201751014118886469#16341#16353regiongenotypes
1832244900764576920#17530#17532regiongenotypes
183372825558228553158#25611#25617regiongenotypes
182759767526917459#6428#6439regiongenotypes
1821253865876897931#10455#10468regiongenotypes
182151393663914897554#12849#12855regiongenotypes
182151492288415062251#12856#12859regiongenotypes
18116430966365014928#717#720regiongenotypes
18147412142074657367#4168#4176regiongenotypes
181151506225115116137#12859#12861regiongenotypes
181152415682824693515#12949#12954regiongenotypes
181282272457723339732#21484#21489regiongenotypes
181372873002228989854#25621#25624regiongenotypes
1805960384810161015#4445#4451regiongenotypes
18053712809237406702#4800#4803regiongenotypes
18053740670237921975#4803#4805regiongenotypes
18057991162881481856#5340#5348regiongenotypes
18084505255945204995#7818#7820regiongenotypes
180135475821256183842#11909#11924regiongenotypes
180293462593034902005#22135#22140regiongenotypes
17951205831912379889#4479#4482regiongenotypes
17993220016032890933#8446#8454regiongenotypes
179122243795022485305#10663#10665regiongenotypes
179133123447431500024#11612#11618regiongenotypes
179135346759754758212#11898#11909regiongenotypes
179172037861221230021#14406#14418regiongenotypes
179293515643835691337#22144#22151regiongenotypes
17841414002214816850#3500#3506regiongenotypes
17851195487412058319#4477#4479regiongenotypes
17884558261546350788#7826#7833regiongenotypes
1781939642875746928#15529#15542regiongenotypes
178205301072553806203#16782#16792regiongenotypes
178361240633812502872#25046#25048regiongenotypes
178372855315828632593#25617#25620regiongenotypes
17747399937474121420#4166#4168regiongenotypes
17754566144246072535#4907#4911regiongenotypes
17793289093333305226#8454#8457regiongenotypes
177101161633012248197#8913#8919regiongenotypes
1771247133925063696#10449#10452regiongenotypes
1771250636965386587#10452#10455regiongenotypes
1771965996317047983#15544#15549regiongenotypes
17619597776996907259#1093#1101regiongenotypes
17691976298822617041#8329#8344regiongenotypes
176101039331810879097#8894#8901regiongenotypes
176151358539513936639#12845#12849regiongenotypes
176214140843142275287#17341#17352regiongenotypes
176234042598141217453#18734#18747regiongenotypes
176264004328041127711#20693#20705regiongenotypes
176282523100825891851#21515#21522regiongenotypes
176342450468824619727#24314#24316regiongenotypes
176361180785512084033#25036#25039regiongenotypes
176361936994819639939#25121#25124regiongenotypes
17544122373941486937#3795#3801regiongenotypes
17554523049445661442#4901#4907regiongenotypes
17584916042149484623#7877#7881regiongenotypes
175101101720811256796#8904#8907regiongenotypes
175164016291540655660#13895#13904regiongenotypes
175202003563420396381#16365#16372regiongenotypes
175283130048131543496#21588#21591regiongenotypes
175293435221034625930#22131#22135regiongenotypes
17432335115824112831#2481#2487regiongenotypes
174122227667422437950#10661#10663regiongenotypes
174161419038414862812#13574#13581regiongenotypes
174263995472140043280#20691#20693regiongenotypes
174342461972724848449#24316#24319regiongenotypes
174372698088927240275#25590#25594regiongenotypes
173259727118932343#1378#1390regiongenotypes
17343026722430560504#3665#3668regiongenotypes
17343056050430613058#3668#3670regiongenotypes
17361440854314807396#5620#5624regiongenotypes
173983878858789349#8218#8222regiongenotypes
17392261704122832737#8344#8348regiongenotypes
173152134669022077933#12915#12923regiongenotypes
173152494956925556599#12961#12968regiongenotypes
173201972212719979247#16362#16364regiongenotypes
173224466032045099215#17948#17952regiongenotypes
17244056356841093924#3781#3791regiongenotypes
17251280855313516566#4488#4494regiongenotypes
17257881491579612824#5327#5337regiongenotypes
17296208031062132027#8799#8801regiongenotypes
172164163483942272257#13912#13916regiongenotypes
172181807715818358166#15102#15106regiongenotypes
172222333821423490792#17731#17733regiongenotypes
172251307768813194541#19697#19699regiongenotypes
17132255622923146400#2474#2480regiongenotypes
17196151847462080310#8792#8799regiongenotypes
171132358316423706280#11498#11501regiongenotypes
171164227225742383414#13916#13918regiongenotypes
171224509921545566263#17952#17957regiongenotypes
171251269820412917997#19691#19694regiongenotypes
171283513022035435799#21645#21651regiongenotypes
17022137713321650965#1540#1543regiongenotypes
17034037444240671896#2649#2655regiongenotypes
17044148693741675745#3801#3805regiongenotypes
17051168017211954874#4474#4477regiongenotypes
17077203509172489342#7210#7214regiongenotypes
17077248934272899861#7214#7220regiongenotypes
170214125086341408431#17336#17341regiongenotypes
170283459503134801243#21638#21641regiongenotypes
1703442299144795615#24057#24066regiongenotypes
169101284194913520959#8925#8934regiongenotypes
169224556626345652679#17957#17960regiongenotypes
169234123551041860159#18748#18755regiongenotypes
169283482022935130220#21642#21645regiongenotypes
169342508751525170631#24321#24324regiongenotypes
16847501274275482630#4180#4184regiongenotypes
16854503586545230494#4897#4901regiongenotypes
16863446277034874368#5868#5870regiongenotypes
16886456210464827059#8053#8059regiongenotypes
16896120853261392293#8787#8790regiongenotypes
168121777587718236555#10590#10597regiongenotypes
168122214841722276674#10658#10661regiongenotypes
168133150002431549297#11618#11620regiongenotypes
168224595623446401928#17962#17966regiongenotypes
168253194100932238364#19936#19943regiongenotypes
168361969483419909223#25125#25129regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameJen2change name
analysis_nameJen22change name
analysis_descriptionTesting
max_block_length15
max_score210
user_loginLrybaczyk
homogeneity_requiredhomogeneity required
casesOFR1,OFR2,OFR3,OFR4,OSA1,OSA10,OSA11,OSA2,OSA3,OSA4,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC10,AKC11,AKC12,AKC2,AKC4,AKC5,AKC6,AKC8,AKC9


retrieve homozyosity scores