Homozygosity on chromosome 38 in canine_100_ped_homo_ys - Canine_100_ped_homozy_ys_copy

max homozygosity score: 160
155 markers
20861014 bp chromosome 38 22517524 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
160382086101422517524#25933#57430regiongenotypes
narrow - use this when all patients are in the same family
160382086101422517524#25933#57430regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_namecanine_100_ped_homo_yschange name
analysis_nameCanine_100_ped_homozy_ys_copychange name
analysis_descriptionCase control analysis canine 100 ped
max_block_length80
max_score160
allele_frequenciescontrols
user_loginahramd1
homogeneity_requiredhomogeneity required
lower_limit0
date2012-02-23 00:00:00
exclusion_length-1
cases100-002,100-017
controls100-001,100-013


retrieve homozyosity scores