Genome-wide homozygosity in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_100-2_ped

max homozygosity score: 240
75897 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
2403753229312100284#140400#140659regiongenotypes
24031250169415955148#140687#140888regiongenotypes
24042126930123280209#146091#146202regiongenotypes
24047358883675458688#30784#30814regiongenotypes
24055835144367952631#152795#153242regiongenotypes
24063105898232701813#155725#155797regiongenotypes
24063422798146159294#155879#156467regiongenotypes
24064617218348039192#5981#156575regiongenotypes
24091167034920174140#166934#167343regiongenotypes
240104990348258744606#171665#172156regiongenotypes
240125766688765022650#179513#88631regiongenotypes
24013384837118104940#180543#181427regiongenotypes
240193962075941986929#101511#202339regiongenotypes
2402032414579752122#101968#45300regiongenotypes
240291743640222682085#227251#227568regiongenotypes
240292306508826778862#227591#227810regiongenotypes
240311010883819687944#231297#22929regiongenotypes
236106162237562488946#172311#37613regiongenotypes
236122351010327384349#177525#177750regiongenotypes
235243281021633324606#216484#19373regiongenotypes
232103795347139049802#171010#171069regiongenotypes
229143423555941885695#185713#186128regiongenotypes
2273042259085544192#228830#228904regiongenotypes
224382086101422517524#25933#57430regiongenotypes
220232137771022712107#213208#213277regiongenotypes
2141459322037035126#184113#184178regiongenotypes
211123641514338480905#178270#178384regiongenotypes
207274540734747092760#116842#51713regiongenotypes
20383516750237693901#35173#164717regiongenotypes
19381227646914075004#163311#35002regiongenotypes
narrow - use this when all patients are in the same family
2403753229312100284#140400#140659regiongenotypes
24031250169415955148#140687#140888regiongenotypes
24042126930123280209#146091#146202regiongenotypes
24047358883675458688#30784#30814regiongenotypes
24055835144367952631#152795#153242regiongenotypes
24063105898232701813#155725#155797regiongenotypes
24063422798146159294#155879#156467regiongenotypes
24064617218348039192#5981#156575regiongenotypes
24091167034920174140#166934#167343regiongenotypes
240104990348258744606#171665#172156regiongenotypes
240125766688765022650#179513#88631regiongenotypes
24013384837118104940#180543#181427regiongenotypes
240193962075941986929#101511#202339regiongenotypes
2402032414579752122#101968#45300regiongenotypes
240291743640222682085#227251#227568regiongenotypes
240292306508826778862#227591#227810regiongenotypes
240311010883819687944#231297#22929regiongenotypes
236106162237562488946#172311#37613regiongenotypes
236122351010327384349#177525#177750regiongenotypes
235243281021633324606#216484#19373regiongenotypes
232103795347139049802#171010#171069regiongenotypes
229143423555941885695#185713#186128regiongenotypes
2273042259085544192#228830#228904regiongenotypes
224382086101422517524#25933#57430regiongenotypes
220232137771022712107#213208#213277regiongenotypes
2141459322037035126#184113#184178regiongenotypes
211123641514338480905#178270#178384regiongenotypes
207274540734747092760#116842#51713regiongenotypes
20383516750237693901#35173#164717regiongenotypes
19381227646914075004#163311#35002regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_100-2_pedchange name
analysis_description100-2 pedigree homozygosity mapping
max_block_length80
max_score240
user_loginahramd
homogeneity_requiredhomogeneity required
lower_limit0
date2012-03-27 00:00:00
exclusion_length2000
cases100-002,100-017,100-072
controls100-001,100-013


retrieve homozyosity scores