Homozygosity on chromosome 19 in Canine_hom_map_27_3_12 - 320_ped_homo_mapping

max homozygosity score: 102
33 markers
3103155 bp chromosome 19 4340151 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
1021931031554340151#200144#200208regiongenotypes
narrow - use this when all patients are in the same family
1021931031554340151#200144#200208regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_name320_ped_homo_mappingchange name
analysis_descriptionanalysis of 320 pedigree members homoz mzpping_7
max_block_length80
max_score102
user_loginahramd
homogeneity_requiredhomogeneity required
lower_limit0
date2012-03-29 00:00:00
exclusion_length1000
cases320-001,320-003,320-005
controls320-006,320-007,320-008,350-004


retrieve homozyosity scores