Homozygosity on chromosome 1 in Canine_hom_map_27_3_12 - 325_ped_homo_mapping-2

max homozygosity score: 80
204 markers
77963875 bp chromosome 1 85188698 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
8017796387585188698#133614#133961regiongenotypes
narrow - use this when all patients are in the same family
8017796387585188698#133614#133961regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_name325_ped_homo_mapping-2change name
analysis_description325 ped homozygosity mapping
max_block_length80
max_score80
user_loginahramd
lower_limit0
date2012-03-30 00:00:00
cases325-001
controls325-002,325-003,325-004


retrieve homozyosity scores