Genome-wide homozygosity in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped

max homozygosity score: 258
104749 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
2583757955315935726#242617#56640regiongenotypes
2563739022164045838#242511#127554regiongenotypes
2563742458754508283#242532#242548regiongenotypes
2523760273536242220#242635#242646regiongenotypes
2503752802555367899#25329#242593regiongenotypes
2503763406646517653#25341#242660regiongenotypes
2483747560374822635#242559#242565regiongenotypes
2463762422206340664#242646#25341regiongenotypes
2443737211333902216#242499#242511regiongenotypes
2443748226354887589#242565#242568regiongenotypes
2443753678995412825#242593#56637regiongenotypes
2443754128255467145#56637#242598regiongenotypes
2443755564025795531#242605#242617regiongenotypes
2443759357265958929#56640#242629regiongenotypes
2423732770443721133#242472#242499regiongenotypes
2423746482764717139#25320#242558regiongenotypes
2423747171394756037#242558#242559regiongenotypes
2423750876295183774#242576#242582regiongenotypes
2423752149925238753#127594#242586regiongenotypes
2423754853065525387#242599#242602regiongenotypes
narrow - use this when all patients are in the same family
2583757955315935726#242617#56640regiongenotypes
2563739022164045838#242511#127554regiongenotypes
2563742458754508283#242532#242548regiongenotypes
2523760273536242220#242635#242646regiongenotypes
2503752802555367899#25329#242593regiongenotypes
2503763406646517653#25341#242660regiongenotypes
2483747560374822635#242559#242565regiongenotypes
2463762422206340664#242646#25341regiongenotypes
2443737211333902216#242499#242511regiongenotypes
2443748226354887589#242565#242568regiongenotypes
2443753678995412825#242593#56637regiongenotypes
2443754128255467145#56637#242598regiongenotypes
2443755564025795531#242605#242617regiongenotypes
2443759357265958929#56640#242629regiongenotypes
2423732770443721133#242472#242499regiongenotypes
2423746482764717139#25320#242558regiongenotypes
2423747171394756037#242558#242559regiongenotypes
2423750876295183774#242576#242582regiongenotypes
2423752149925238753#127594#242586regiongenotypes
2423754853065525387#242599#242602regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_pedchange name
analysis_description350 ped-2 homozygosity mapping
max_block_length80
max_score258
user_loginahramd
homogeneity_requiredhomogeneity required
lower_limit0
date2012-04-05 00:00:00
exclusion_length1000
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores