Homozygosity on chromosome 5 in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped-2_copy

max homozygosity score: 400
681 markers
20854094 bp chromosome 5 41107067 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
37252085409441107067#150889#31676regiongenotypes
narrow - use this when all patients are in the same family
37253709961239384667#70479#151834regiongenotypes
34053990931640905773#31656#151910regiongenotypes
33252431850424623301#151040#151056regiongenotypes
33253138596731729509#151431#151453regiongenotypes
32953535272935755815#151644#70409regiongenotypes
32753623756136417176#70432#151701regiongenotypes
32652286884623023588#150977#150983regiongenotypes
32653658069436817650#151711#70470regiongenotypes
32552257352022699346#4621#150971regiongenotypes
32553186720331984377#151460#31515regiongenotypes
32553270408132772158#31540#31542regiongenotypes
32553348904333610155#151540#151548regiongenotypes
32452120289821320672#4609#150911regiongenotypes
32452203493122357941#150940#4620regiongenotypes
32452885409329037489#151284#4697regiongenotypes
32453007657730137509#151355#4716regiongenotypes
32453126844031373326#4734#151430regiongenotypes
32453403287034157574#151571#151577regiongenotypes
32352248018222573520#150959#4621regiongenotypes
32352303555823149876#31384#150993regiongenotypes
32352326063123392169#70043#70052regiongenotypes
32352464941824751732#151057#151064regiongenotypes
32352490006025404785#151071#151096regiongenotypes
32352578303025852550#151114#151117regiongenotypes
32353108678731246561#151416#4733regiongenotypes
32353209600132182654#4745#4746regiongenotypes
32353218265432242056#4746#31526regiongenotypes
32353249815032557813#151487#151492regiongenotypes
32353280468632902463#151504#31545regiongenotypes
32353295907333017317#151515#151518regiongenotypes
32353320515333481797#31554#151539regiongenotypes
32353473819834892243#31577#151619regiongenotypes
32353502952835155584#70382#151635regiongenotypes
32353687744337081986#151719#151732regiongenotypes
32252091354420973407#4603#31343regiongenotypes
32252273942422798935#31376#150973regiongenotypes
32252369019923853808#151012#151022regiongenotypes
32252636524226487822#4665#151144regiongenotypes
32252662866526728845#4668#151158regiongenotypes
32252684579426978369#151165#151173regiongenotypes
32252727045827316610#4672#151192regiongenotypes
32252762747727760860#31440#151219regiongenotypes
32252778558927879633#151221#151226regiongenotypes
32252861482528683028#151269#151274regiongenotypes
32252877606328854093#151279#151284regiongenotypes
32252918715429240705#151301#151304regiongenotypes
32252993573130016833#151344#151351regiongenotypes
32253255781332611758#151492#4753regiongenotypes
32253261175832666562#4753#4754regiongenotypes
32253645508536493588#151704#70450regiongenotypes
32152085409420913544#150889#4603regiongenotypes
32152098089921023580#31344#150897regiongenotypes
32152102358021088185#150897#31345regiongenotypes
32152132067221516926#150911#4613regiongenotypes
32152318941023236599#150994#31387regiongenotypes
32152397509424064707#151027#31399regiongenotypes
32152406470724178013#31399#31401regiongenotypes
32152672884526765307#151158#151161regiongenotypes
32152676530726845794#151161#151165regiongenotypes
32152697836927009611#151173#151176regiongenotypes
32152720632227227210#151186#4671regiongenotypes
32152813811928230423#4680#151245regiongenotypes
32152833710828374980#31454#151252regiongenotypes
32152837498028414140#151252#31456regiongenotypes
32152850226328532781#151260#151262regiongenotypes
32152870443028776063#151276#151279regiongenotypes
32152924070529291802#151304#151306regiongenotypes
32152954753229683178#151321#151329regiongenotypes
32153030061930333342#151367#151370regiongenotypes
32153035245230441037#4719#31481regiongenotypes
32153044103730466533#31481#151379regiongenotypes
32153062667230662803#151392#151395regiongenotypes
32153066280330701936#151395#4725regiongenotypes
32153070193630754855#4725#151400regiongenotypes
32153075485530785799#151400#151403regiongenotypes
32153086061730878045#151407#151408regiongenotypes
32153182007431867203#4740#151460regiongenotypes
32153199404932005227#31516#151466regiongenotypes
32153201856632068916#151467#31519regiongenotypes
32153206891632096001#31519#4745regiongenotypes
32153224205632266043#31526#31528regiongenotypes
32153290246332954927#31545#151514regiongenotypes
32153394869134009871#70312#70318regiongenotypes
32153437371034411959#151589#151592regiongenotypes
32153452342234589470#151600#4775regiongenotypes
32153578187835818300#151664#151667regiongenotypes
32153682903736845402#151718#31599regiongenotypes
32153939041139422818#4822#151836regiongenotypes
32054070821441107067#31671#31676regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_ped-2_copychange name
analysis_description350 ped-2 homozygosity mapping
max_block_length80
max_score400
user_loginahramd
lower_limit0
date2012-04-07 00:00:00
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores