Homozygosity on chromosome 6 in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped-2_copy

max homozygosity score: 400
12 markers
31339166 bp chromosome 6 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
33063133916631943854#155738#155761regiongenotypes
narrow - use this when all patients are in the same family
33063133916631943854#155738#155761regiongenotypes
32063189456531943854#5838#155761regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_ped-2_copychange name
analysis_description350 ped-2 homozygosity mapping
max_block_length80
max_score400
user_loginahramd
lower_limit0
date2012-04-07 00:00:00
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores