Homozygosity on chromosome 6 in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped-2_copy

max homozygosity score: 400
141 markers
31339166 bp chromosome 6 35072272 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
33063133916635072272#155738#5874regiongenotypes
narrow - use this when all patients are in the same family
33063133916631943854#155738#155761regiongenotypes
32763410478934196845#155872#33063regiongenotypes
32463329138133427083#33026#33036regiongenotypes
32463387112833977225#155856#5860regiongenotypes
32463453595534812095#155893#33100regiongenotypes
32363323218133291381#73874#33026regiongenotypes
32363426093634327941#155881#155883regiongenotypes
32363496330135028456#155909#155912regiongenotypes
32263222332432433646#155774#155785regiongenotypes
32263436133134409440#33072#155887regiongenotypes
32263481209534846842#33100#33103regiongenotypes
32163200498332223324#5840#155774regiongenotypes
32163270181332760070#155797#155800regiongenotypes
32163302261333080427#155815#155820regiongenotypes
32163354829733570931#155844#155845regiongenotypes
32163403103534067028#155867#155869regiongenotypes
32163407808534104789#155870#155872regiongenotypes
32163425182534260936#33064#155881regiongenotypes
32163443221634462130#155888#33076regiongenotypes
32163446213034535955#33076#155893regiongenotypes
32163493595034963301#155906#155909regiongenotypes
32063501452035072272#5872#5874regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_ped-2_copychange name
analysis_description350 ped-2 homozygosity mapping
max_block_length80
max_score400
user_loginahramd
lower_limit0
date2012-04-07 00:00:00
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores