Homozygosity on chromosome 33 in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped-2_3

max homozygosity score: 400
102 markers
15791790 bp chromosome 33 18652499 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
323331579179018652499#235967#236129regiongenotypes
narrow - use this when all patients are in the same family
323331715916317247221#54687#54689regiongenotypes
322331681376216933149#236032#23815regiongenotypes
322331762578417655399#54694#123471regiongenotypes
322331786864318024349#236083#123477regiongenotypes
322331832447818342944#236112#236114regiongenotypes
321331606265216204744#235985#235997regiongenotypes
321331622802816282440#235999#23805regiongenotypes
321331628244016601172#23805#236019regiongenotypes
321331665798316691948#236023#236025regiongenotypes
321331669194816754038#236025#236029regiongenotypes
321331693314916986840#23815#236039regiongenotypes
321331698684017009749#236039#54680regiongenotypes
321331700974917050391#54680#236041regiongenotypes
321331705039117084614#236041#54685regiongenotypes
321331708461417147376#54685#236047regiongenotypes
321331775802217837364#236077#236081regiongenotypes
321331841376118447863#236118#236120regiongenotypes
320331842599118652499#236119#236129regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_ped-2_3change name
analysis_description350 ped-2 homozygosity mapping
max_block_length80
max_score400
user_loginahramd
lower_limit0
date2012-04-12 00:00:00
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores