Homozygosity on chromosome 10 in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped_no_homo

max homozygosity score: 400
208 markers
31799140 bp chromosome 10 38250495 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
400103179914038250495#9096#171027regiongenotypes
narrow - use this when all patients are in the same family
400103433129637554220#170836#9175regiongenotypes
325103192561332004905#170720#170725regiongenotypes
324103379888933977607#170809#170817regiongenotypes
322103282136732917906#9110#170768regiongenotypes
322103313437633220018#9114#170782regiongenotypes
322103330432233377776#9117#170790regiongenotypes
322103338470133422749#170791#37199regiongenotypes
322103342274933476717#37199#170793regiongenotypes
322103768257437778220#37301#9177regiongenotypes
321103183529031925613#170716#170720regiongenotypes
321103249578232566255#170747#170751regiongenotypes
321103293869032986306#9112#37193regiongenotypes
321103322001833272839#170782#170785regiongenotypes
321103353484333580749#170797#170800regiongenotypes
321103374639833777044#37210#37212regiongenotypes
321103404861434071996#9127#170820regiongenotypes
321103408771534113768#9128#170823regiongenotypes
321103412837734161079#170824#170826regiongenotypes
321103419746934331296#37225#170836regiongenotypes
321103762053837652895#170994#170996regiongenotypes
321103765289537675509#170996#170998regiongenotypes
320103773009038250495#9176#171027regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_ped_no_homochange name
analysis_description350 ped-2 homozygosity mapping, no genetic homogeneity required
max_block_length80
max_score400
user_loginahramd
lower_limit0
date2012-04-25 00:00:00
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores