Homozygosity on chromosome 20 in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped_no_homo

max homozygosity score: 400
399 markers
43583845 bp chromosome 20 58237305 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
360204358384558237305#16693#16849regiongenotypes
narrow - use this when all patients are in the same family
360205802507858237305#16847#16849regiongenotypes
337204902840749715259#16743#205549regiongenotypes
331205725438157404672#205923#46027regiongenotypes
330205686653457149007#205910#205919regiongenotypes
325204358384544354720#16693#205307regiongenotypes
325204561293945714803#205369#45815regiongenotypes
325204616141646570835#205399#103203regiongenotypes
325205648045156558493#205893#205896regiongenotypes
324205763775757739836#16846#205946regiongenotypes
323204533588445535898#16703#205366regiongenotypes
323205016907050245147#45897#205574regiongenotypes
323205108896151331433#45909#103415regiongenotypes
322204554732245576303#16707#205368regiongenotypes
322204802655448169316#103254#205487regiongenotypes
322205038430450575525#205581#205590regiongenotypes
322205102511351068512#205610#45908regiongenotypes
322205775442857927619#205948#46040regiongenotypes
322205792761957992139#46040#46043regiongenotypes
321204517845445252501#205351#205352regiongenotypes
321204571480345754334#45815#205376regiongenotypes
321204745408347520654#205453#205457regiongenotypes
321204755170647585373#205458#103221regiongenotypes
321204796330247989521#205476#205479regiongenotypes
321204818114548206831#205488#205490regiongenotypes
321204856873848617486#205506#205509regiongenotypes
321205035541650384304#16759#205581regiongenotypes
321205160388151679429#205638#103433regiongenotypes
321205655849356600979#205896#205898regiongenotypes
321205661333856661761#205899#45995regiongenotypes
321205666176156693073#45995#16833regiongenotypes
321205740467257421138#46027#46029regiongenotypes
321205756178857604538#205938#205940regiongenotypes
321205773983657754428#205946#205948regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_ped_no_homochange name
analysis_description350 ped-2 homozygosity mapping, no genetic homogeneity required
max_block_length80
max_score400
user_loginahramd
lower_limit0
date2012-04-25 00:00:00
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores