Homozygosity on chromosome 29 in Canine_hom_map_27_3_12 - Canine_hom_map_27_3_12_350-2_ped_no_homo

max homozygosity score: 400
117 markers
34824137 bp chromosome 29 39096367 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
320293482413739096367#228287#22199regiongenotypes
narrow - use this when all patients are in the same family
320293482413739096367#228287#22199regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_nameCanine_hom_map_27_3_12_350-2_ped_no_homochange name
analysis_description350 ped-2 homozygosity mapping, no genetic homogeneity required
max_block_length80
max_score400
user_loginahramd
lower_limit0
date2012-04-25 00:00:00
cases350-001,350-002,350-005,350-022,350-043
controls350-010,350-011,350-012,350-038


retrieve homozyosity scores