Homozygosity on chromosome 1 in affecteds_350_320 - affecteds_350_320

max homozygosity score: 880
36 markers
100637612 bp chromosome 1 101402531 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
8161100637612101402531#27239#134786regiongenotypes
narrow - use this when all patients are in the same family
8161101146665101402531#60122#134786regiongenotypes
7511100986400101072772#134765#134770regiongenotypes
7431100802591100909710#134760#134762regiongenotypes
7421101072772101104959#134770#134772regiongenotypes
7381100662035100802591#1152#134760regiongenotypes
7341100637612100662035#27239#1152regiongenotypes
7321100909710100986400#134762#134765regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameaffecteds_350_320change name
analysis_nameaffecteds_350_320change name
max_block_length80
max_score880
user_loginahramd
lower_limit0
date2012-12-03 00:00:00
cases320-001,320-003,320-005,350-001,350-002,350-005,350-011,350-020,350-022,350-033,350-043
controlsnone


retrieve homozyosity scores