Homozygosity on chromosome 11 in affecteds_350_320 - affecteds_350_320

max homozygosity score: 880
241 markers
44097438 bp chromosome 11 47679803 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
828114409743847679803#174744#174958regiongenotypes
narrow - use this when all patients are in the same family
828114668080247036618#174891#10050regiongenotypes
827114470509045202756#174779#38174regiongenotypes
822114634558546650757#38185#174888regiongenotypes
818114576547946042054#174838#10037regiongenotypes
814114720606047395809#174926#174939regiongenotypes
806114528208945409701#174808#174817regiongenotypes
806114616259746276994#174858#174865regiongenotypes
805114703661847127398#10050#174922regiongenotypes
804114569925145765479#174833#174838regiongenotypes
804114609442646162597#174855#174858regiongenotypes
802114521216345268401#174804#174807regiongenotypes
802114540970145510046#174817#10032regiongenotypes
802114551004645600471#10032#38175regiongenotypes
801114560047145611645#38175#174828regiongenotypes
801114564001645660985#38177#174830regiongenotypes
801114567055145699251#174831#174833regiongenotypes
801114604854046090962#174853#174854regiongenotypes
801114627699446304934#174865#38184regiongenotypes
801114715389547185339#174923#174925regiongenotypes
761114437098544547704#174759#10025regiongenotypes
752114409743844191398#174744#174749regiongenotypes
751114426716244370985#174754#174759regiongenotypes
748114422654444246983#174751#174753regiongenotypes
738114455491344591529#10026#174772regiongenotypes
725114459152944612973#174772#174774regiongenotypes
725114759290247610237#174951#174953regiongenotypes
724114460457944630596#174773#174775regiongenotypes
724114739580947448928#174939#10054regiongenotypes
724114745209547489929#174942#10055regiongenotypes
724114760529247679803#174952#174958regiongenotypes
722114463059644677565#174775#174777regiongenotypes
722114748992947507236#10055#174945regiongenotypes
722114755943447592902#174949#174951regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameaffecteds_350_320change name
analysis_nameaffecteds_350_320change name
max_block_length80
max_score880
user_loginahramd
lower_limit0
date2012-12-03 00:00:00
cases320-001,320-003,320-005,350-001,350-002,350-005,350-011,350-020,350-022,350-033,350-043
controlsnone


retrieve homozyosity scores