Homozygosity on chromosome 12 in affecteds_350_320 - affecteds_350_320

max homozygosity score: 880
155 markers
35803467 bp chromosome 12 38480905 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
818123580346738480905#178236#178384regiongenotypes
narrow - use this when all patients are in the same family
818123748095937899159#178326#10816regiongenotypes
815123606960336338287#178247#178266regiongenotypes
808123713463037292811#178310#178316regiongenotypes
806123668742336786850#178286#10811regiongenotypes
805123826412138348649#178370#178376regiongenotypes
803123592745336069603#178244#178247regiongenotypes
803123633828736397238#178266#178269regiongenotypes
803123639723836454666#178269#88160regiongenotypes
803123690931137056901#178300#178304regiongenotypes
803123735642637480959#178320#178326regiongenotypes
803123789915937944067#10816#178350regiongenotypes
803123814997638202857#178363#10821regiongenotypes
803123836554638469782#178378#178383regiongenotypes
802123650227736533615#88164#39103regiongenotypes
802123653696836590813#178275#178278regiongenotypes
802123661777836653580#178280#178283regiongenotypes
802123665358036687423#178283#178286regiongenotypes
802123820285738229535#10821#10822regiongenotypes
801123685212836909311#178297#178300regiongenotypes
801123730972437356426#178317#178320regiongenotypes
801123795888437980930#178351#178353regiongenotypes
801123822953538249815#10822#178369regiongenotypes
800123844555338480905#178381#178384regiongenotypes
727123580346735846491#178236#88152regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameaffecteds_350_320change name
analysis_nameaffecteds_350_320change name
max_block_length80
max_score880
user_loginahramd
lower_limit0
date2012-12-03 00:00:00
cases320-001,320-003,320-005,350-001,350-002,350-005,350-011,350-020,350-022,350-033,350-043
controlsnone


retrieve homozyosity scores