Homozygosity on chromosome 3 in affecteds_350_320 - affecteds_350_320

max homozygosity score: 880
192 markers
63168062 bp chromosome 3 65828321 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
87036316806265828321#2943#2970regiongenotypes
narrow - use this when all patients are in the same family
87036540203165828321#143415#2970regiongenotypes
82136379106264053888#143343#29357regiongenotypes
82036316806263425495#2943#143326regiongenotypes
81136418184064350980#65826#143373regiongenotypes
81136457312364861390#29366#143392regiongenotypes
80736360069063740054#143332#29348regiongenotypes
80736528598265398104#143411#65884regiongenotypes
80636490920065078184#143394#143401regiongenotypes
80436412194864181840#143359#65826regiongenotypes
80336516181365209415#2960#143408regiongenotypes
80236342549563459071#143326#143328regiongenotypes
80236443930464472930#143378#143381regiongenotypes
80236486139064909200#143392#143394regiongenotypes
80236509668965161813#29369#2960regiongenotypes
80136345907163484442#143328#29340regiongenotypes
80136349164163515105#65784#29341regiongenotypes
80136352703363540221#29342#29344regiongenotypes
80136357841263600690#143331#143332regiongenotypes
80136374005463757754#29348#143342regiongenotypes
80136405808764100410#143356#143358regiongenotypes
80136436563564394072#143375#143376regiongenotypes
80136450316664525419#2953#143383regiongenotypes
80136523559465246590#143409#143410regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameaffecteds_350_320change name
analysis_nameaffecteds_350_320change name
max_block_length80
max_score880
user_loginahramd
lower_limit0
date2012-12-03 00:00:00
cases320-001,320-003,320-005,350-001,350-002,350-005,350-011,350-020,350-022,350-033,350-043
controlsnone


retrieve homozyosity scores