Genome-wide homozygosity in affecteds_350_320 - affecteds_350_320

max homozygosity score: 880
147895 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
88031392279022987520#2384#141324regiongenotypes
88034870696862242138#142622#29289regiongenotypes
88038487129586072424#144520#144597regiongenotypes
8806329504116241862#72716#155036regiongenotypes
88063945554845967090#156129#156457regiongenotypes
8808907430110601071#34972#163210regiongenotypes
88095536334556981942#168959#169035regiongenotypes
88013303618118171797#39521#181432regiongenotypes
878191525310419648099#200843#44669regiongenotypes
87036316806265828321#2943#2970regiongenotypes
865372746967228591758#56932#25618regiongenotypes
857113875322343023084#174480#38160regiongenotypes
853323679131041655244#23621#235220regiongenotypes
847372892120529662312#56970#243900regiongenotypes
8383076499099824035#22334#22347regiongenotypes
83354188584443753642#31690#152048regiongenotypes
82928419821685055207#139939#139984regiongenotypes
829153162648834698392#188850#189027regiongenotypes
829344066885841704975#239043#24532regiongenotypes
828114409743847679803#174744#174958regiongenotypes
825184476135747305044#199415#199539regiongenotypes
82344889904750169765#147507#147584regiongenotypes
823243676532838056312#49140#216712regiongenotypes
8202067290297753276#203345#102152regiongenotypes
818123580346738480905#178236#178384regiongenotypes
817103417950837647571#170828#37300regiongenotypes
8161100637612101402531#27239#134786regiongenotypes
815831751354278157#77657#162864regiongenotypes
805362341907923507086#56484#241817regiongenotypes
803550963845556488#150067#150097regiongenotypes
796205247874953423249#16779#16787regiongenotypes
792154537071347131250#41513#41523regiongenotypes
7922254447756163861#46886#46893regiongenotypes
79031252114213316914#140688#2374regiongenotypes
787543046235022265#69321#150062regiongenotypes
785331579179016171200#235967#235994regiongenotypes
78322750865028022054#137083#137113regiongenotypes
783321452180715380772#233661#23361regiongenotypes
78272605983326696889#159674#159714regiongenotypes
781183264469031691#129788#129828regiongenotypes
7811930117756931631#200138#15546regiongenotypes
780184769199048240207#199556#199590regiongenotypes
7791101629809102397881#134795#27252regiongenotypes
7773130094674302682#230848#230929regiongenotypes
77556607233766696051#32054#5152regiongenotypes
773252438348429298903#218471#218787regiongenotypes
770323291507735307266#234737#234865regiongenotypes
76938408948084739032#144475#144511regiongenotypes
76895314717553488481#168851#82100regiongenotypes
767131841432618480894#181445#181450regiongenotypes
76686882537769411057#35641#166247regiongenotypes
765102360439624737343#37022#83582regiongenotypes
76272169833921755001#159443#159448regiongenotypes
760113535355336048630#174282#174321regiongenotypes
75291167034920150433#166934#167341regiongenotypes
752253244862333005804#218966#218997regiongenotypes
7493731705344045838#242464#127554regiongenotypes
74725274331853739715#138347#138404regiongenotypes
747151719548518517514#12885#188080regiongenotypes
7421874407537992883#197316#15007regiongenotypes
7391081766099136638#8872#36875regiongenotypes
738242685702326930950#19268#109968regiongenotypes
73662419794824758279#155404#155435regiongenotypes
73593290941833221088#167930#167951regiongenotypes
735213664766136981442#207875#207893regiongenotypes
732105400520354675333#171877#9388regiongenotypes
732242645076326746051#216183#216200regiongenotypes
732323642658236622828#234933#234944regiongenotypes
732362295264623234040#25165#56475regiongenotypes
732362680286527315463#242022#242050regiongenotypes
73034550746345831376#28972#2722regiongenotypes
730101475723114974756#169875#169885regiongenotypes
730242742737127466259#48892#48895regiongenotypes
729372986427230748208#243908#25659regiongenotypes
7281896583889888565#197449#43853regiongenotypes
727343935315439772222#55569#24505regiongenotypes
726124355453443610379#39144#178685regiongenotypes
726172803978828654550#43124#195151regiongenotypes
723281062621811418984#224792#21335regiongenotypes
723331628244016601172#23805#236019regiongenotypes
7222965466016631278#226652#21807regiongenotypes
72116511525265149894#132939#132940regiongenotypes
72134463902944884277#2707#142425regiongenotypes
7212058277006324981#203315#203331regiongenotypes
72034774269947924396#28997#142588regiongenotypes
720181245628012719433#197596#197607regiongenotypes
719451089495238015#145180#145191regiongenotypes
719101956863520320072#170112#170151regiongenotypes
719224160888941799948#211083#211096regiongenotypes
71895943618559709250#169138#169147regiongenotypes
718343596681836082646#24456#238775regiongenotypes
71753859020038732273#31630#151804regiongenotypes
717114320912643283612#174705#38162regiongenotypes
71545161648651837435#147681#147696regiongenotypes
715172942948329578535#195200#195207regiongenotypes
71462763513328416738#155564#155597regiongenotypes
7141056795876743123#169450#169495regiongenotypes
713101848449918645753#170070#8994regiongenotypes
71232372497124185742#141371#28749regiongenotypes
712242629052626406563#216175#216179regiongenotypes
712244733459847480765#49364#49367regiongenotypes
711101875573019547095#170082#36981regiongenotypes
711163242633132452815#13791#42198regiongenotypes
71034302289443340039#142331#142345regiongenotypes
710231500466415057787#47757#212883regiongenotypes
70828507751985154012#139986#139991regiongenotypes
70828515401285185093#139991#139993regiongenotypes
70834804227348266577#64977#142600regiongenotypes
70872598453626018486#159669#159672regiongenotypes
70893254643432880304#167911#36167regiongenotypes
7082144239065136680#206193#206234regiongenotypes
708242677858026857023#216201#19268regiongenotypes
70734766211947742699#142576#28997regiongenotypes
70662340569423492059#155365#155370regiongenotypes
706176220993362545186#196842#196859regiongenotypes
706181273119313006312#197608#197622regiongenotypes
706242616890726202760#216168#216171regiongenotypes
70595928362859349834#36754#169132regiongenotypes
7051542378064444714#187390#187401regiongenotypes
7052356213456054487#212410#212437regiongenotypes
705343995983540015835#238999#239002regiongenotypes
70428505520785077519#139984#139986regiongenotypes
70434792439647973222#142588#29002regiongenotypes
704101842803118448668#36978#36979regiongenotypes
704194949959749537892#202790#45093regiongenotypes
704194964627949712362#202797#202801regiongenotypes
704194983585749911216#202807#202811regiongenotypes
704242620276026270399#216171#216174regiongenotypes
704242674605126778580#216200#216201regiongenotypes
704343550069835585033#238742#238748regiongenotypes
704343989573639948410#238995#238998regiongenotypes
narrow - use this when all patients are in the same family
88031392279017915305#2384#141007regiongenotypes
88035067401155554924#142715#142955regiongenotypes
88038487129585925485#144520#144586regiongenotypes
8806329504116241862#72716#155036regiongenotypes
88063945554842580374#156129#156296regiongenotypes
88064437057945967090#156370#156457regiongenotypes
8808928230710200293#163131#163187regiongenotypes
88095666014456981942#169020#169035regiongenotypes
8801330361815201827#39521#180627regiongenotypes
87931994297720974420#141135#28736regiongenotypes
878191525310416255796#200843#200896regiongenotypes
87036540203165828321#143415#2970regiongenotypes
868191642206217411727#200907#200967regiongenotypes
8651354229196383843#180638#180695regiongenotypes
865372764081228591758#56938#25618regiongenotypes
86395566201756130330#168975#82436regiongenotypes
857113949700640613017#38128#174577regiongenotypes
853323843432539390236#235050#23646regiongenotypes
84835910374559672947#143133#29218regiongenotypes
847372892120529513128#56970#243894regiongenotypes
838113875322339310116#174480#38122regiongenotypes
8383076499098587630#22334#229079regiongenotypes
83435692522257382494#143022#143046regiongenotypes
834131521101715671311#181244#39624regiongenotypes
83354188584442119094#31690#151971regiongenotypes
8331388286439236734#11303#180870regiongenotypes
83131806011418446407#141016#141043regiongenotypes
82928419821684451162#139939#28533regiongenotypes
829131769295718047801#181403#181422regiongenotypes
829153162648831971821#188850#188873regiongenotypes
829344136588741666147#239085#239106regiongenotypes
82835756587058036898#143054#29184regiongenotypes
82835825891258668741#143085#143106regiongenotypes
828114668080247036618#174891#10050regiongenotypes
828131064457211079568#180962#180989regiongenotypes
827114470509045202756#174779#38174regiongenotypes
825184583910046246004#199466#199484regiongenotypes
8243088960499193541#119894#22342regiongenotypes
82344894965049273672#147508#147530regiongenotypes
823243720692837528370#216672#216688regiongenotypes
822114634558546650757#38185#174888regiongenotypes
8221375137877908654#180769#180795regiongenotypes
82136379106264053888#143343#29357regiongenotypes
82154213980442582241#31698#151988regiongenotypes
821131149640811777117#181017#181032regiongenotypes
82036316806263425495#2943#143326regiongenotypes
820131567464815977923#89239#181289regiongenotypes
8202075384467753276#16220#102152regiongenotypes
819243676532836976470#49140#49147regiongenotypes
81836169208061890193#29273#2926regiongenotypes
818114576547946042054#174838#10037regiongenotypes
818123748095937899159#178326#10816regiongenotypes
818131118861711466979#11331#11333regiongenotypes
81732102575621269377#141211#141226regiongenotypes
81781028675910601071#163192#163210regiongenotypes
817103708453937368056#170964#170980regiongenotypes
8171364878486777361#180702#180717regiongenotypes
817131225164612509494#181062#181076regiongenotypes
817243754551837750239#49156#216700regiongenotypes
8161101146665101402531#60122#134786regiongenotypes
81635616131156544884#29161#143002regiongenotypes
81664332060244176909#156335#156363regiongenotypes
8161368431787086495#180722#180739regiongenotypes
81532286711922987520#141315#141324regiongenotypes
81536130939661554384#143222#2918regiongenotypes
815831751354278157#77657#162864regiongenotypes
815123606960336338287#178247#178266regiongenotypes
8151395690719809028#180896#180912regiongenotypes
815184631965146616892#15414#15415regiongenotypes
814114720606047395809#174926#174939regiongenotypes
814131345663913678709#181135#181147regiongenotypes
814131638768216573431#181320#181333regiongenotypes
814323784968938089875#235017#235029regiongenotypes
813323679131036961351#23621#234960regiongenotypes
813323716137937335080#234974#234984regiongenotypes
812131623264016383882#11379#181319regiongenotypes
812184502083345203778#199429#199439regiongenotypes
81136418184064350980#65826#143373regiongenotypes
81136457312364861390#29366#143392regiongenotypes
81144991489450052554#147568#147580regiongenotypes
811131466214214827317#181212#181224regiongenotypes
811184476135744823835#199415#44268regiongenotypes
81036199331162136587#143257#29285regiongenotypes
81054305131143245970#152010#152021regiongenotypes
81095650587356641553#169012#8724regiongenotypes
81013999798010117059#180922#39570regiongenotypes
810153229299632468068#13054#188899regiongenotypes
810153254680432694802#188905#188914regiongenotypes
810153424721234402146#189001#189010regiongenotypes
80935565336555883084#142960#142971regiongenotypes
80935669712856876770#143012#143019regiongenotypes
80954334768743461715#152027#152035regiongenotypes
80995624193956404869#169000#8721regiongenotypes
809103686481036993575#170956#37297regiongenotypes
809131262872312758804#181085#181095regiongenotypes
809153321629233329982#188943#188951regiongenotypes
809153386109334055684#188981#188992regiongenotypes
809191921644919331166#44664#100835regiongenotypes
809191958149119648099#201109#44669regiongenotypes
808103742218837554220#9173#9175regiongenotypes
808123713463037292811#178310#178316regiongenotypes
8081385970988726417#11299#180842regiongenotypes
808131710786017206716#89261#181375regiongenotypes
808243797374738056312#216708#216712regiongenotypes
80731935477219447081#141095#141102regiongenotypes
80732143765521663645#141236#141246regiongenotypes
80735968042959823094#143158#143162regiongenotypes
80736002312760139595#29224#29227regiongenotypes
80736025794260373918#143179#29238regiongenotypes
80736360069063740054#143332#29348regiongenotypes
80736528598265398104#143411#65884regiongenotypes
80754352131343677675#152037#4885regiongenotypes
807131047995410623213#180949#180960regiongenotypes
807131739035417499527#181385#181394regiongenotypes
807191882387018930639#201062#44661regiongenotypes
807372746967227543323#56932#128148regiongenotypes
80631857503518700802#141053#141062regiongenotypes
80635877054358889827#143112#143119regiongenotypes
80636490920065078184#143394#143401regiongenotypes
80654266944842937434#151993#4876regiongenotypes
806114528208945409701#174808#174817regiongenotypes
806114616259746276994#174858#174865regiongenotypes
806123668742336786850#178286#10811regiongenotypes
806131599075616072110#181290#11377regiongenotypes
806131610403516212235#39629#181305regiongenotypes
806153449706134593519#189017#13080regiongenotypes
806184482661244931220#15400#199423regiongenotypes
806184551333345669370#199452#44285regiongenotypes
806184667725146752427#199505#199509regiongenotypes
806191771567817871178#200988#200997regiongenotypes
806191937883919467628#201094#201100regiongenotypes
806243698759637057904#216659#49149regiongenotypes
80531870080218767185#141062#28719regiongenotypes
80531886051718939550#141069#2445regiongenotypes
80531920653319303013#141085#141091regiongenotypes
80532202035422100011#2470#141265regiongenotypes
80535738601057456374#2865#143050regiongenotypes
80535803689858085421#29184#29186regiongenotypes
80535813243358210466#143080#143084regiongenotypes
80535982309459903982#143162#143166regiongenotypes
80536013959560208301#29227#143175regiongenotypes
805114703661847127398#10050#174922regiongenotypes
805123826412138348649#178370#178376regiongenotypes
8051353329315422919#11269#180638regiongenotypes
8051373314167401047#180757#180762regiongenotypes
8051398234649899740#180914#11315regiongenotypes
805131018449810250132#39575#180936regiongenotypes
805131036234910436318#180942#180946regiongenotypes
805131183468911920014#11337#181041regiongenotypes
805131199485412075858#181046#181050regiongenotypes
805131256203812628723#39596#181085regiongenotypes
805131335280413452641#181128#181134regiongenotypes
805131723850317375197#181378#181384regiongenotypes
805131754177017616813#11390#89268regiongenotypes
805153207480332224900#41367#188883regiongenotypes
805153273444032853840#188917#188923regiongenotypes
805153308902233159681#188937#188941regiongenotypes
805153349254733550432#188960#93048regiongenotypes
805153370877133767970#93050#13069regiongenotypes
805153440214634497061#189010#189017regiongenotypes
805184681742946887600#199514#44304regiongenotypes
805184708555147148323#44309#44310regiongenotypes
805184721295647282286#199531#199537regiongenotypes
805243705790437127441#49149#216667regiongenotypes
805362341907923437572#56484#56485regiongenotypes
80431877267518855030#28720#28724regiongenotypes
80431983361519884385#141126#28732regiongenotypes
80432126937721317307#141226#2468regiongenotypes
80432188227222020263#141252#28739regiongenotypes
80435599352156060376#142978#142981regiongenotypes
80435606530356156029#142982#29159regiongenotypes
80435663917956697128#143009#143012regiongenotypes
80435749565257542327#143052#29178regiongenotypes
80436116983361244760#143217#29267regiongenotypes
80436125119861309396#143220#143222regiongenotypes
80436412194864181840#143359#65826regiongenotypes
80444973357549797789#147556#30551regiongenotypes
80464268797543076649#33222#5956regiongenotypes
804103702046437071036#9168#170963regiongenotypes
804114071756740794422#174579#174584regiongenotypes
804114103025641115369#86002#174600regiongenotypes
804114569925145765479#174833#174838regiongenotypes
804114609442646162597#174855#174858regiongenotypes
8041382346558361957#180817#180823regiongenotypes
8041394367589489053#180886#180890regiongenotypes
804153246806832523939#188899#188903regiongenotypes
804153405568434150710#188992#93066regiongenotypes
804184494907345020833#199424#199429regiongenotypes
804184694538746990128#199521#44307regiongenotypes
804191741172717490481#200967#200972regiongenotypes
804191764450917715678#200983#200988regiongenotypes
804191852841218587518#201042#201047regiongenotypes
804243782127337907434#216704#49162regiongenotypes
804323763702237686712#235004#235008regiongenotypes
804323820910538274116#235036#235041regiongenotypes
804372756673827640812#243806#56938regiongenotypes
80331795175517998098#141010#141014regiongenotypes
80331851202118575035#141048#141053regiongenotypes
80331949634519542668#141106#28729regiongenotypes
80331955940319596475#141110#141113regiongenotypes
80332132513021437655#141230#141236regiongenotypes
80332166364521882272#141246#141252regiongenotypes
80332216910822233338#141270#141274regiongenotypes
80332249767422556229#141291#2474regiongenotypes
80332257687222634605#141296#141300regiongenotypes
80335890002258989085#65348#143126regiongenotypes
80335905957759103745#2891#143133regiongenotypes
80336064006660703323#143197#143200regiongenotypes
80336082506160870855#143205#143208regiongenotypes
80336155438461622980#2918#143238regiongenotypes
80336516181365209415#2960#143408regiongenotypes
80344937149249461026#68263#147540regiongenotypes
80344967174349733575#147552#147556regiongenotypes
80344979778949834683#30551#147562regiongenotypes
803554515805498902#150090#150093regiongenotypes
80354294694143020550#152006#152008regiongenotypes
80395646540256505873#82467#169012regiongenotypes
803114090846141030256#174591#86002regiongenotypes
803123592745336069603#178244#178247regiongenotypes
803123633828736397238#178266#178269regiongenotypes
803123639723836454666#178269#88160regiongenotypes
803123690931137056901#178300#178304regiongenotypes
803123735642637480959#178320#178326regiongenotypes
803123789915937944067#10816#178350regiongenotypes
803123814997638202857#178363#10821regiongenotypes
803123836554638469782#178378#178383regiongenotypes
8031352706225332931#180629#11269regiongenotypes
8031364497876487848#180699#180702regiongenotypes
8031374105137455499#11292#180766regiongenotypes
8031379086547957327#180795#180798regiongenotypes
8031387684098828643#180845#11303regiongenotypes
803131011705910152493#39570#89150regiongenotypes
803131179046511834689#181033#11337regiongenotypes
803131193820311994854#181043#181046regiongenotypes
803131283712812897466#89200#39600regiongenotypes
803131312213013189273#11348#181118regiongenotypes
803131379853513837358#11356#181157regiongenotypes
803131512330815211017#181241#181244regiongenotypes
803131668746316742602#181341#181344regiongenotypes
803131675551716807766#181346#181349regiongenotypes
803131815146918171797#181431#181432regiongenotypes
803153291041732965760#188928#188932regiongenotypes
803153332998233387372#188951#188954regiongenotypes
803153340484833464970#188955#188958regiongenotypes
803184526689945330424#199443#44274regiongenotypes
803184534498645381701#44275#44278regiongenotypes
803184624600446319651#199484#15414regiongenotypes
803184714832347195320#44310#44315regiongenotypes
803191787117817950393#200997#201001regiongenotypes
803191801419718080277#44654#201010regiongenotypes
803191819244618235055#15645#15647regiongenotypes
803191823936318286956#201020#201024regiongenotypes
803191863838218702550#201050#201054regiongenotypes
803191916268919216449#201084#44664regiongenotypes
803323775121537795702#235012#23629regiongenotypes
803323830659438382345#235042#235045regiongenotypes
80231900103319050898#64308#2447regiongenotypes
80231917173019206533#28727#141085regiongenotypes
80231931760319345993#2451#141094regiongenotypes
80231944708119482991#141102#141105regiongenotypes
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change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameaffecteds_350_320change name
analysis_nameaffecteds_350_320change name
max_block_length80
max_score880
user_loginahramd
lower_limit0
date2012-12-03 00:00:00
cases320-001,320-003,320-005,350-001,350-002,350-005,350-011,350-020,350-022,350-033,350-043
controlsnone


retrieve homozyosity scores