Homozygosity on chromosome 15 in affecteds_350_320 - affecteds_350_320_copy

max homozygosity score: 880
65 markers
17195485 bp chromosome 15 18517514 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
747151719548518517514#12885#188080regiongenotypes
narrow - use this when all patients are in the same family
747151836799118502053#12895#41233regiongenotypes
743151725734317448967#188024#188031regiongenotypes
743151766738917788417#12888#188044regiongenotypes
742151719548517257343#12885#188024regiongenotypes
741151758369617667389#188035#12888regiongenotypes
741151783925217871299#188048#188051regiongenotypes
741151793825618001555#188054#188057regiongenotypes
741151820590218256614#188066#188069regiongenotypes
741151829931818320622#188070#12894regiongenotypes
741151832062218367991#12894#12895regiongenotypes
740151749601517569102#12886#188033regiongenotypes
740151756910217583696#188033#188035regiongenotypes
740151787129917908285#188051#188053regiongenotypes
740151802511718048669#41227#188058regiongenotypes
740151806658718155790#188060#188063regiongenotypes
740151815579018205902#188063#188066regiongenotypes
740151850205318512302#41233#12898regiongenotypes
739151851062518517514#41234#188080regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameaffecteds_350_320change name
analysis_nameaffecteds_350_320_copychange name
max_block_length80
max_score880
user_loginahramd
lower_limit0
date2012-12-05 00:00:00
cases320-001,320-003,320-005,350-001,350-002,350-005,350-011,350-020,350-022,350-033,350-043
controlsnone


retrieve homozyosity scores