Genome-wide homozygosity in canine_100_ped_homo_ys - sharp

max homozygosity score: 320
167989 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
32026948378070132778#2075#28263regiongenotypes
3203753229310829776#140400#28640regiongenotypes
32031673443517915305#140936#141007regiongenotypes
32031994297720974420#141135#28736regiongenotypes
320530378645556488#69296#150097regiongenotypes
320564386267502526#150146#150205regiongenotypes
32055835144358590938#152795#5074regiongenotypes
32066433529766017823#157536#157621regiongenotypes
320830313254821131#162804#34907regiongenotypes
320105648390257436628#172031#172081regiongenotypes
320131999450821086465#39659#39685regiongenotypes
320132166950922966236#181607#89415regiongenotypes
320141171261413825122#40518#184529regiongenotypes
320143423555934260517#185713#185714regiongenotypes
320143812991241885695#40740#186128regiongenotypes
3201854305905826824#14991#197239regiongenotypes
3201874407537824592#197316#197338regiongenotypes
320193858385439501663#202156#202205regiongenotypes
3202230411816163861#208788#46893regiongenotypes
3202530556744903222#217355#217435regiongenotypes
3202555290247018885#217474#217572regiongenotypes
320253928123039877701#49973#20059regiongenotypes
320311080692416699185#231343#231660regiongenotypes
320362934870029498868#242173#25256regiongenotypes
320372909303630748208#243876#25659regiongenotypes
320382089494422517524#57381#57430regiongenotypes
31772077372821474077#159389#159429regiongenotypes
3151858455567353538#197241#197311regiongenotypes
3121679973528890492#191104#191143regiongenotypes
30955923942460302233#152833#152883regiongenotypes
30714997261410738431#12105#184345regiongenotypes
30667691374177610032#158271#33622regiongenotypes
30556533230566164077#153118#153156regiongenotypes
30495772567157891497#169066#169073regiongenotypes
3041339909594871620#89051#180607regiongenotypes
302292189809922682085#227518#227568regiongenotypes
301131841432619237875#181445#181493regiongenotypes
300101475723115445695#169875#36948regiongenotypes
2983273907638181992#233277#233318regiongenotypes
2971101408174102397881#134787#27252regiongenotypes
29764437057944567311#156370#156378regiongenotypes
29575890312059769003#161411#161457regiongenotypes
29575984709859920050#161462#34481regiongenotypes
2952153455655564266#206245#206257regiongenotypes
294126149256962356408#179720#11076regiongenotypes
2941891205989996030#197418#43857regiongenotypes
29381006701510200293#163178#163187regiongenotypes
29381071874410940264#163217#163226regiongenotypes
292363057980031266304#242248#242294regiongenotypes
29172598453626716368#159669#159715regiongenotypes
291115776558957973544#38245#86252regiongenotypes
29027755363678177187#139586#2173regiongenotypes
29056197960362551398#31976#152985regiongenotypes
290125003609051212577#179058#179118regiongenotypes
2903730199494045838#242455#127554regiongenotypes
289184932911249362141#44371#199652regiongenotypes
2882057908166579987#203312#203342regiongenotypes
2882578132468557417#49469#217651regiongenotypes
287141093767211578465#91144#40513regiongenotypes
28647358883673612129#30784#148921regiongenotypes
286658701386467443#32567#154544regiongenotypes
28664534581345967090#156423#156457regiongenotypes
2841117109983117922686#135492#60665regiongenotypes
28315377144154484083#132320#132362regiongenotypes
283472718367464030#145312#145325regiongenotypes
28362654546227290070#155517#32948regiongenotypes
283764111396665635#158639#33736regiongenotypes
282355348276250178#140290#140328regiongenotypes
2821361795416767750#180682#180716regiongenotypes
282141500083015588996#184593#184626regiongenotypes
280292498191125589980#227698#227733regiongenotypes
2791435147113834956#184013#90985regiongenotypes
279163166433332119711#42176#192266regiongenotypes
27887445098474784590#166471#166486regiongenotypes
278105621893656342333#172010#172021regiongenotypes
278152784467628314246#188609#41341regiongenotypes
277125395195554386003#39215#179299regiongenotypes
2771368431787344665#180722#89109regiongenotypes
27631264049513237535#140695#140725regiongenotypes
27632879246129002208#2517#64417regiongenotypes
27662763513328416738#155564#155597regiongenotypes
27681349353214075004#163375#35002regiongenotypes
276111797000618495327#173450#37875regiongenotypes
276113942677639930544#85987#174546regiongenotypes
276184948832849871026#199660#44383regiongenotypes
2761937313244340151#200171#200208regiongenotypes
27556477235365327351#153089#32041regiongenotypes
2751440510255164321#184041#184072regiongenotypes
275151308953613712102#187813#187839regiongenotypes
274135750432458100464#183488#183521regiongenotypes
274211909809119570912#207003#46262regiongenotypes
274212106245221420029#207106#46290regiongenotypes
27321523847715637906#136499#61478regiongenotypes
273143483414735331816#185746#185774regiongenotypes
273242742737127466259#48892#48895regiongenotypes
27266029648960343389#157308#157311regiongenotypes
2721395424349933429#11312#11316regiongenotypes
272143664614137112791#185847#185878regiongenotypes
272274736140447940856#224377#21240regiongenotypes
27127183928871995218#139316#139322regiongenotypes
27127219207372300958#139330#139339regiongenotypes
271143360797334020926#185672#185700regiongenotypes
271164562198646028679#193007#193033regiongenotypes
270366842477183766#64095#2314regiongenotypes
27095134853551886593#168768#81914regiongenotypes
2703042259084322901#228830#53046regiongenotypes
2703130094673470611#230848#121273regiongenotypes
26916391884364667370#132871#132915regiongenotypes
26964198271242446503#156262#156285regiongenotypes
269132468559725034459#181758#39777regiongenotypes
269135689817857295550#183452#183476regiongenotypes
269173422629234535470#195448#195465regiongenotypes
2691930117753703272#200138#200169regiongenotypes
2692572001367600291#19622#217604regiongenotypes
26895990102760035477#36771#169164regiongenotypes
268152836635828735065#188641#188665regiongenotypes
268203451426034934336#204815#204837regiongenotypes
268292456583524912425#227675#227695regiongenotypes
2683054254185544192#228898#228904regiongenotypes
26721573371916190151#136529#1479regiongenotypes
267106832022668648839#37666#37675regiongenotypes
267131521101715562532#181244#181265regiongenotypes
2672144239065253180#206193#206239regiongenotypes
266194004132640390210#202230#202250regiongenotypes
26625994679810290097#49487#217731regiongenotypes
265481091828433837#145358#29956regiongenotypes
26565968556160036150#157273#157295regiongenotypes
26571926513219594760#159310#33946regiongenotypes
265113785808438334763#9954#174458regiongenotypes
265114454770444958279#10025#38173regiongenotypes
265142977591730135240#185441#185459regiongenotypes
2651692952709377128#191166#41825regiongenotypes
265164520223845496520#192980#192999regiongenotypes
265292636810826667701#22039#22043regiongenotypes
2653290807189564370#54218#54224regiongenotypes
26432372497124185742#141371#28749regiongenotypes
264451089495785078#145180#145225regiongenotypes
26474834777149002188#160843#160871regiongenotypes
26475865594558893940#161393#161410regiongenotypes
26495715316357713051#169041#169065regiongenotypes
26332471774425290132#141421#141444regiongenotypes
26356428728664698044#153068#153085regiongenotypes
26382520959325569432#164040#164063regiongenotypes
263111960655819913744#173530#9740regiongenotypes
263193823285938533894#15915#44960regiongenotypes
263201781744617879007#203930#203933regiongenotypes
263203385803733930101#204781#45683regiongenotypes
263211875093619044738#206983#207001regiongenotypes
263311830831418613671#231753#231775regiongenotypes
263323662774437022648#234945#234965regiongenotypes
26227014710870457036#28264#139240regiongenotypes
26232321824123483305#141339#64350regiongenotypes
26256273915862973600#32004#153003regiongenotypes
26271631450916779967#159164#159184regiongenotypes
2621056795876743123#169450#169495regiongenotypes
262106345798063740369#172415#172428regiongenotypes
262115718470757458186#38233#86246regiongenotypes
262131951884619780378#181508#181521regiongenotypes
262212076263821044116#17070#207105regiongenotypes
262292426912724534390#227660#227674regiongenotypes
26143265106432909188#146675#146691regiongenotypes
261892823079395879#163131#163138regiongenotypes
261114528208945600471#174808#38175regiongenotypes
261122747277428304753#177755#177798regiongenotypes
261123749484537899159#178327#10816regiongenotypes
261126244630162705263#179776#179792regiongenotypes
2611351525855444520#180623#180640regiongenotypes
2611376494837957327#89114#180798regiongenotypes
261131453494414827317#181204#181224regiongenotypes
261132600238226278054#181823#181838regiongenotypes
261324103365341655244#235188#235220regiongenotypes
26024455652044626590#27943#137924regiongenotypes
260125609196756349485#179406#179426regiongenotypes
260131420938814446907#181178#181197regiongenotypes
260163116668731428531#192213#192224regiongenotypes
260164400512944273984#192908#192927regiongenotypes
260173359453733892477#195419#195431regiongenotypes
260182278381923073043#198151#198169regiongenotypes
25921483556315081651#1466#1470regiongenotypes
25921649090316675682#136563#136567regiongenotypes
259498562599963841#145462#145470regiongenotypes
25991687577817207137#167167#167183regiongenotypes
25995624193956491969#169000#169011regiongenotypes
259116919951769483649#38465#176069regiongenotypes
2591385558778828643#39549#11303regiongenotypes
259131782792518074753#11395#181424regiongenotypes
259164370062443970901#192892#192906regiongenotypes
259182059080820740860#198048#198057regiongenotypes
259183041745730655361#198613#198626regiongenotypes
259183066343430937130#198627#44047regiongenotypes
259184165459941687622#199270#199273regiongenotypes
259242645076326778580#216183#216201regiongenotypes
259242715995827418084#216222#48891regiongenotypes
25827234778872638859#139342#139354regiongenotypes
25863956717039839267#156133#156147regiongenotypes
25871701423717123577#159203#159212regiongenotypes
258111755613917694347#173428#173435regiongenotypes
258173390256834104310#195432#195442regiongenotypes
2581960422686309433#200291#200307regiongenotypes
2582070968117351321#203361#102128regiongenotypes
258254112851141333850#50003#219421regiongenotypes
2583282003208487673#233319#54207regiongenotypes
258341523014615587788#124699#237604regiongenotypes
25733187161132173118#141806#141822regiongenotypes
25743347626633674068#30295#30297regiongenotypes
25762305043023104205#32870#155353regiongenotypes
25783302831733515975#164481#35151regiongenotypes
257131018223110380255#39574#11321regiongenotypes
257131228300212513114#181065#181077regiongenotypes
257131379853514049234#11356#181168regiongenotypes
257131573067815977923#181274#181289regiongenotypes
257131748230417698811#181393#181404regiongenotypes
257134970316749764731#183026#183031regiongenotypes
257135857306458753677#183549#183562regiongenotypes
257141385627614092941#12153#12156regiongenotypes
257141440111714654248#184560#184575regiongenotypes
257164446232144697509#192935#95178regiongenotypes
257211679119117170502#46229#104312regiongenotypes
257311697889717231502#231677#231687regiongenotypes
256336244893903071#140180#2286regiongenotypes
25632636385826604337#141498#141513regiongenotypes
256593976309550347#150316#150325regiongenotypes
25656118465361453717#152927#152943regiongenotypes
256895620199756055#163150#7450regiongenotypes
256111773029517808565#173436#173440regiongenotypes
256111790896917962661#173447#85485regiongenotypes
256114079442241107383#174584#174599regiongenotypes
256131125681711466979#181002#11333regiongenotypes
256141643441116693442#184676#184689regiongenotypes
256154961230749705551#189825#189830regiongenotypes
256233573086036236737#213968#108443regiongenotypes
256292169751821889772#227507#227517regiongenotypes
2563077404018642075#229035#229081regiongenotypes
256311891047419113450#231794#53797regiongenotypes
256312164524821718151#231966#231970regiongenotypes
narrow - use this when all patients are in the same family
32026948378070132778#2075#28263regiongenotypes
3203753229310829776#140400#28640regiongenotypes
32031673443517915305#140936#141007regiongenotypes
32031994297720974420#141135#28736regiongenotypes
320530378645556488#69296#150097regiongenotypes
320564386267502526#150146#150205regiongenotypes
32055835144358590938#152795#5074regiongenotypes
32066433529766017823#157536#157621regiongenotypes
320830313254821131#162804#34907regiongenotypes
320105648390257436628#172031#172081regiongenotypes
320131999450821086465#39659#39685regiongenotypes
320132166950922966236#181607#89415regiongenotypes
320141171261413825122#40518#184529regiongenotypes
320143423555934260517#185713#185714regiongenotypes
320143812991241885695#40740#186128regiongenotypes
3201854305905826824#14991#197239regiongenotypes
3201874407537824592#197316#197338regiongenotypes
320193858385439501663#202156#202205regiongenotypes
3202230411816163861#208788#46893regiongenotypes
3202530556744903222#217355#217435regiongenotypes
3202555290247018885#217474#217572regiongenotypes
320253928123039877701#49973#20059regiongenotypes
320311080692416699185#231343#231660regiongenotypes
320362934870029498868#242173#25256regiongenotypes
320372909303630748208#243876#25659regiongenotypes
320382089494422517524#57381#57430regiongenotypes
31772077372821474077#159389#159429regiongenotypes
3151858455567353538#197241#197311regiongenotypes
3121679973528890492#191104#191143regiongenotypes
30955923942460302233#152833#152883regiongenotypes
30714997261410738431#12105#184345regiongenotypes
30667691374177610032#158271#33622regiongenotypes
30556533230566164077#153118#153156regiongenotypes
30495772567157891497#169066#169073regiongenotypes
3041339909594871620#89051#180607regiongenotypes
302292189809922682085#227518#227568regiongenotypes
301131841432619237875#181445#181493regiongenotypes
300101475723115445695#169875#36948regiongenotypes
2983273907638181992#233277#233318regiongenotypes
2971101408174102397881#134787#27252regiongenotypes
29764437057944567311#156370#156378regiongenotypes
29575890312059769003#161411#161457regiongenotypes
29575984709859920050#161462#34481regiongenotypes
2952153455655564266#206245#206257regiongenotypes
294126149256962356408#179720#11076regiongenotypes
2941891205989996030#197418#43857regiongenotypes
29381006701510200293#163178#163187regiongenotypes
29381071874410940264#163217#163226regiongenotypes
292363057980031266304#242248#242294regiongenotypes
29172598453626716368#159669#159715regiongenotypes
291115776558957973544#38245#86252regiongenotypes
29027755363678177187#139586#2173regiongenotypes
29056197960362551398#31976#152985regiongenotypes
290125003609051212577#179058#179118regiongenotypes
2903730199494045838#242455#127554regiongenotypes
289184932911249362141#44371#199652regiongenotypes
2882057908166579987#203312#203342regiongenotypes
2882578132468557417#49469#217651regiongenotypes
287141093767211578465#91144#40513regiongenotypes
28647358883673612129#30784#148921regiongenotypes
286658701386467443#32567#154544regiongenotypes
28664534581345967090#156423#156457regiongenotypes
2841117109983117922686#135492#60665regiongenotypes
28315377144154484083#132320#132362regiongenotypes
283472718367464030#145312#145325regiongenotypes
28362654546227290070#155517#32948regiongenotypes
283764111396665635#158639#33736regiongenotypes
282355348276250178#140290#140328regiongenotypes
2821361795416767750#180682#180716regiongenotypes
282141500083015588996#184593#184626regiongenotypes
280292498191125589980#227698#227733regiongenotypes
2791435147113834956#184013#90985regiongenotypes
279163166433332119711#42176#192266regiongenotypes
27887445098474784590#166471#166486regiongenotypes
278105621893656342333#172010#172021regiongenotypes
278152784467628314246#188609#41341regiongenotypes
277125395195554386003#39215#179299regiongenotypes
2771368431787344665#180722#89109regiongenotypes
27631264049513237535#140695#140725regiongenotypes
27632879246129002208#2517#64417regiongenotypes
27662763513328416738#155564#155597regiongenotypes
27681349353214075004#163375#35002regiongenotypes
276111797000618495327#173450#37875regiongenotypes
276113942677639930544#85987#174546regiongenotypes
276184948832849871026#199660#44383regiongenotypes
2761937313244340151#200171#200208regiongenotypes
27556477235365327351#153089#32041regiongenotypes
2751440510255164321#184041#184072regiongenotypes
275151308953613712102#187813#187839regiongenotypes
274135750432458100464#183488#183521regiongenotypes
274211909809119570912#207003#46262regiongenotypes
274212106245221420029#207106#46290regiongenotypes
27321523847715637906#136499#61478regiongenotypes
273143483414735331816#185746#185774regiongenotypes
273242742737127466259#48892#48895regiongenotypes
27266029648960343389#157308#157311regiongenotypes
2721395424349933429#11312#11316regiongenotypes
272143664614137112791#185847#185878regiongenotypes
272274736140447940856#224377#21240regiongenotypes
27127183928871995218#139316#139322regiongenotypes
27127219207372300958#139330#139339regiongenotypes
271143360797334020926#185672#185700regiongenotypes
271164562198646028679#193007#193033regiongenotypes
270366842477183766#64095#2314regiongenotypes
27095134853551886593#168768#81914regiongenotypes
2703042259084322901#228830#53046regiongenotypes
2703130094673470611#230848#121273regiongenotypes
26916391884364667370#132871#132915regiongenotypes
26964198271242446503#156262#156285regiongenotypes
269132468559725034459#181758#39777regiongenotypes
269135689817857295550#183452#183476regiongenotypes
269173422629234535470#195448#195465regiongenotypes
2691930117753703272#200138#200169regiongenotypes
2692572001367600291#19622#217604regiongenotypes
26895990102760035477#36771#169164regiongenotypes
268152836635828735065#188641#188665regiongenotypes
268203451426034934336#204815#204837regiongenotypes
268292456583524912425#227675#227695regiongenotypes
2683054254185544192#228898#228904regiongenotypes
26721573371916190151#136529#1479regiongenotypes
267106832022668648839#37666#37675regiongenotypes
267131521101715562532#181244#181265regiongenotypes
2672144239065253180#206193#206239regiongenotypes
266194004132640390210#202230#202250regiongenotypes
26625994679810290097#49487#217731regiongenotypes
265481091828433837#145358#29956regiongenotypes
26565968556160036150#157273#157295regiongenotypes
26571926513219594760#159310#33946regiongenotypes
265113785808438334763#9954#174458regiongenotypes
265114454770444958279#10025#38173regiongenotypes
265142977591730135240#185441#185459regiongenotypes
2651692952709377128#191166#41825regiongenotypes
265164520223845496520#192980#192999regiongenotypes
265292636810826667701#22039#22043regiongenotypes
2653290807189564370#54218#54224regiongenotypes
26432372497124185742#141371#28749regiongenotypes
264451089495785078#145180#145225regiongenotypes
26474834777149002188#160843#160871regiongenotypes
26475865594558893940#161393#161410regiongenotypes
26495715316357713051#169041#169065regiongenotypes
26332471774425290132#141421#141444regiongenotypes
26356428728664698044#153068#153085regiongenotypes
26382520959325569432#164040#164063regiongenotypes
263111960655819913744#173530#9740regiongenotypes
263193823285938533894#15915#44960regiongenotypes
263201781744617879007#203930#203933regiongenotypes
263203385803733930101#204781#45683regiongenotypes
263211875093619044738#206983#207001regiongenotypes
263311830831418613671#231753#231775regiongenotypes
263323662774437022648#234945#234965regiongenotypes
26227014710870457036#28264#139240regiongenotypes
26232321824123483305#141339#64350regiongenotypes
26256273915862973600#32004#153003regiongenotypes
26271631450916779967#159164#159184regiongenotypes
2621056795876743123#169450#169495regiongenotypes
262106345798063740369#172415#172428regiongenotypes
262115718470757458186#38233#86246regiongenotypes
262131951884619780378#181508#181521regiongenotypes
262212076263821044116#17070#207105regiongenotypes
262292426912724534390#227660#227674regiongenotypes
26143265106432909188#146675#146691regiongenotypes
261892823079395879#163131#163138regiongenotypes
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2611351525855444520#180623#180640regiongenotypes
2611376494837957327#89114#180798regiongenotypes
261131453494414827317#181204#181224regiongenotypes
261132600238226278054#181823#181838regiongenotypes
261324103365341655244#235188#235220regiongenotypes
26024455652044626590#27943#137924regiongenotypes
260125609196756349485#179406#179426regiongenotypes
260131420938814446907#181178#181197regiongenotypes
260163116668731428531#192213#192224regiongenotypes
260164400512944273984#192908#192927regiongenotypes
260173359453733892477#195419#195431regiongenotypes
260182278381923073043#198151#198169regiongenotypes
25921483556315081651#1466#1470regiongenotypes
25921649090316675682#136563#136567regiongenotypes
259498562599963841#145462#145470regiongenotypes
25991687577817207137#167167#167183regiongenotypes
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259116919951769483649#38465#176069regiongenotypes
2591385558778828643#39549#11303regiongenotypes
259131782792518074753#11395#181424regiongenotypes
259164370062443970901#192892#192906regiongenotypes
259182059080820740860#198048#198057regiongenotypes
259183041745730655361#198613#198626regiongenotypes
259183066343430937130#198627#44047regiongenotypes
259184165459941687622#199270#199273regiongenotypes
259242645076326778580#216183#216201regiongenotypes
259242715995827418084#216222#48891regiongenotypes
25827234778872638859#139342#139354regiongenotypes
25863956717039839267#156133#156147regiongenotypes
25871701423717123577#159203#159212regiongenotypes
258111755613917694347#173428#173435regiongenotypes
258173390256834104310#195432#195442regiongenotypes
2581960422686309433#200291#200307regiongenotypes
2582070968117351321#203361#102128regiongenotypes
258254112851141333850#50003#219421regiongenotypes
2583282003208487673#233319#54207regiongenotypes
258341523014615587788#124699#237604regiongenotypes
25733187161132173118#141806#141822regiongenotypes
25743347626633674068#30295#30297regiongenotypes
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25783302831733515975#164481#35151regiongenotypes
257131018223110380255#39574#11321regiongenotypes
257131228300212513114#181065#181077regiongenotypes
257131379853514049234#11356#181168regiongenotypes
257131573067815977923#181274#181289regiongenotypes
257131748230417698811#181393#181404regiongenotypes
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257135857306458753677#183549#183562regiongenotypes
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257141440111714654248#184560#184575regiongenotypes
257164446232144697509#192935#95178regiongenotypes
257211679119117170502#46229#104312regiongenotypes
257311697889717231502#231677#231687regiongenotypes
256336244893903071#140180#2286regiongenotypes
25632636385826604337#141498#141513regiongenotypes
256593976309550347#150316#150325regiongenotypes
25656118465361453717#152927#152943regiongenotypes
256895620199756055#163150#7450regiongenotypes
256111773029517808565#173436#173440regiongenotypes
256111790896917962661#173447#85485regiongenotypes
256114079442241107383#174584#174599regiongenotypes
256131125681711466979#181002#11333regiongenotypes
256141643441116693442#184676#184689regiongenotypes
256154961230749705551#189825#189830regiongenotypes
256233573086036236737#213968#108443regiongenotypes
256292169751821889772#227507#227517regiongenotypes
2563077404018642075#229035#229081regiongenotypes
256311891047419113450#231794#53797regiongenotypes
256312164524821718151#231966#231970regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_namecanine_100_ped_homo_yschange name
analysis_namesharpchange name
max_block_length80
max_score320
user_loginahramd1
lower_limit0
date2014-05-20 00:00:00
cases100-001,100-002,100-013,100-017
controlsnone


retrieve homozyosity scores