Homozygosity on chromosome 1 in affecteds_350_320 - sharp

max homozygosity score: 880
47 markers
101629809 bp chromosome 1 102397881 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
7791101629809102397881#134795#27252regiongenotypes
narrow - use this when all patients are in the same family
7791101711498102397881#60139#27252regiongenotypes
7431101629809101711498#134795#60139regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameaffecteds_350_320change name
analysis_namesharpchange name
max_block_length80
max_score880
user_loginahramd
lower_limit0
date2014-05-20 00:00:00
cases320-001,320-003,320-005,350-001,350-002,350-005,350-011,350-020,350-022,350-033,350-043
controlsnone


retrieve homozyosity scores