Homozygosity on chromosome 12 in Jen2 - Jen22_copy

max homozygosity score: 210
 8 markers
5386587 bp chromosome 12 6897931 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
1821253865876897931#10455#10468regiongenotypes
narrow - use this when all patients are in the same family
1821253865876897931#10455#10468regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameJen2change name
analysis_nameJen22_copychange name
analysis_descriptionTesting
max_block_length15
max_score210
user_loginLrybaczyk
lower_limit0
date2015-05-17 00:00:00
casesOFR1,OFR2,OFR3,OFR4,OSA1,OSA10,OSA11,OSA2,OSA3,OSA4,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC10,AKC11,AKC12,AKC2,AKC4,AKC5,AKC6,AKC8,AKC9


retrieve homozyosity scores