Homozygosity on chromosome 22 in Jen2 - Jen22_copy

max homozygosity score: 210
 13 markers
4931776 bp chromosome 22 5958199 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
2072249317765958199#17537#17552regiongenotypes
narrow - use this when all patients are in the same family
2072249317765958199#17537#17552regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameJen2change name
analysis_nameJen22_copychange name
analysis_descriptionTesting
max_block_length15
max_score210
user_loginLrybaczyk
lower_limit0
date2015-05-17 00:00:00
casesOFR1,OFR2,OFR3,OFR4,OSA1,OSA10,OSA11,OSA2,OSA3,OSA4,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC10,AKC11,AKC12,AKC2,AKC4,AKC5,AKC6,AKC8,AKC9


retrieve homozyosity scores