Homozygosity on chromosome 4 in Jen2 - Jen22_copy

max homozygosity score: 210
18 markers
30267224 bp chromosome 4 32463712 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
19743026722432463712#3665#3690regiongenotypes
narrow - use this when all patients are in the same family
19743108797932042029#3678#3686regiongenotypes
18343077993931050017#3674#3677regiongenotypes
18343204202932463712#3686#3690regiongenotypes
18143061305830702458#3670#3672regiongenotypes
17343026722430560504#3665#3668regiongenotypes
17343056050430613058#3668#3670regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameJen2change name
analysis_nameJen22_copychange name
analysis_descriptionTesting
max_block_length15
max_score210
user_loginLrybaczyk
lower_limit0
date2015-05-17 00:00:00
casesOFR1,OFR2,OFR3,OFR4,OSA1,OSA10,OSA11,OSA2,OSA3,OSA4,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC10,AKC11,AKC12,AKC2,AKC4,AKC5,AKC6,AKC8,AKC9


retrieve homozyosity scores