Genome-wide homozygosity in Jen2 - Jen22_copy

max homozygosity score: 210
16674 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
21025381316712665425#19599#19690regiongenotypes
20964138744845708756#5948#5976regiongenotypes
20815954296460732945#669#687regiongenotypes
2072232591875958199#17517#17552regiongenotypes
20554699003048608611#4922#4942regiongenotypes
203243708786537829955#19431#19441regiongenotypes
20226362178665563140#2011#2034regiongenotypes
20241295619915180516#3484#3512regiongenotypes
19953538497037921975#4782#4805regiongenotypes
19743026722432463712#3665#3690regiongenotypes
1972440024435306144#18963#18970regiongenotypes
19663544993436590724#5881#5896regiongenotypes
196372591523126980889#25571#25590regiongenotypes
19416173884462703625#698#708regiongenotypes
19426807100170963423#2063#2092regiongenotypes
1945867172410161015#4436#4451regiongenotypes
19484505255946350788#7818#7833regiongenotypes
194342346283025087515#24296#24321regiongenotypes
194361240633814040409#25046#25065regiongenotypes
19315515989355806706#611#620regiongenotypes
19216313536865014928#711#720regiongenotypes
192243817909939388088#19445#19462regiongenotypes
189133205577432412417#11629#11638regiongenotypes
189163922613940655660#13886#13904regiongenotypes
189224988000550831663#18014#18031regiongenotypes
188135210115152675362#11889#11892regiongenotypes
18751016101511680172#4451#4474regiongenotypes
187102340387124048734#9024#9032regiongenotypes
187222221350323569819#17719#17734regiongenotypes
187251292559713469369#19695#19704regiongenotypes
18516955818071034177#764#779regiongenotypes
185372810702229412203#25609#25633regiongenotypes
184956025708789349#8198#8222regiongenotypes
18347147780072498908#4134#4147regiongenotypes
183132283493723487992#11487#11495regiongenotypes
183201751014118886469#16341#16353regiongenotypes
182759767526917459#6428#6439regiongenotypes
1821245738846897931#10446#10468regiongenotypes
182151358539515116137#12845#12861regiongenotypes
18147399937474954845#4166#4178regiongenotypes
181152415682824693515#12949#12954regiongenotypes
181282272457723652227#21484#21492regiongenotypes
181293386010335691337#22123#22151regiongenotypes
18057991162881481856#5340#5348regiongenotypes
180135346759756183842#11898#11924regiongenotypes
17951168017212379889#4474#4482regiongenotypes
17993217437933552225#8445#8460regiongenotypes
179122227667422485305#10661#10665regiongenotypes
179133123447431500024#11612#11618regiongenotypes
179172037861221230021#14406#14418regiongenotypes
1781939642877047983#15529#15549regiongenotypes
178205301072553806203#16782#16792regiongenotypes
17754523049446217490#4901#4912regiongenotypes
177101161633012368783#8913#8921regiongenotypes
17619597776996907259#1093#1101regiongenotypes
17691976298822832737#8329#8348regiongenotypes
176101039331810879097#8894#8901regiongenotypes
176214140843142657951#17341#17353regiongenotypes
176234042598141217453#18734#18747regiongenotypes
176263995472141127711#20691#20705regiongenotypes
176282523100825925940#21515#21523regiongenotypes
176361180785512084033#25036#25039regiongenotypes
176361936994819639939#25121#25124regiongenotypes
17544111368741486937#3792#3801regiongenotypes
17584916042149484623#7877#7881regiongenotypes
175101101720811256796#8904#8907regiongenotypes
175201997924720396381#16364#16372regiongenotypes
175283130048131543496#21588#21591regiongenotypes
17432335115824112831#2481#2487regiongenotypes
174161413645014908985#13573#13582regiongenotypes
174372698088927240275#25590#25594regiongenotypes
173259727118932343#1378#1390regiongenotypes
17361440854315377854#5620#5631regiongenotypes
17396278742262850710#8809#8811regiongenotypes
173152134669022077933#12915#12923regiongenotypes
173152494956925556599#12961#12968regiongenotypes
173201972212719979247#16362#16364regiongenotypes
173224466032045099215#17948#17952regiongenotypes
17244056356841093924#3781#3791regiongenotypes
17251280855313516566#4488#4494regiongenotypes
17257881491579612824#5327#5337regiongenotypes
17296208031062132027#8799#8801regiongenotypes
172164163483942523734#13912#13919regiongenotypes
172181772527318358166#15099#15106regiongenotypes
17132255622923351158#2474#2481regiongenotypes
17196139229362080310#8790#8799regiongenotypes
171132358316423706280#11498#11501regiongenotypes
171224509921545566263#17952#17957regiongenotypes
171251266542512925597#19690#19695regiongenotypes
171283513022035435799#21645#21651regiongenotypes
17022137713321650965#1540#1543regiongenotypes
17034037444240671896#2649#2655regiongenotypes
17044148693741675745#3801#3805regiongenotypes
17077203509172899861#7210#7220regiongenotypes
170214125086341408431#17336#17341regiongenotypes
170283459503134801243#21638#21641regiongenotypes
1703442299144795615#24057#24066regiongenotypes
170372486625025092584#25555#25557regiongenotypes
169101284194913520959#8925#8934regiongenotypes
169224556626345652679#17957#17960regiongenotypes
169234123551041860159#18748#18755regiongenotypes
169283482022935130220#21642#21645regiongenotypes
169342508751525170631#24321#24324regiongenotypes
169342527842025429019#24325#24328regiongenotypes
16847501274275482630#4180#4184regiongenotypes
16854503586545230494#4897#4901regiongenotypes
16863446277034874368#5868#5870regiongenotypes
16886456210464827059#8053#8059regiongenotypes
16896120853261392293#8787#8790regiongenotypes
168121777587718236555#10590#10597regiongenotypes
168122214841722276674#10658#10661regiongenotypes
168133150002431549297#11618#11620regiongenotypes
168224595623446401928#17962#17966regiongenotypes
168253194100932238364#19936#19943regiongenotypes
168361969483419909223#25125#25129regiongenotypes
narrow - use this when all patients are in the same family
2102538131679568442#19599#19650regiongenotypes
20964213378845084289#5954#5968regiongenotypes
20815981101360732945#673#687regiongenotypes
2072249317765958199#17537#17552regiongenotypes
20554801852248608611#4935#4942regiongenotypes
203243738644137829955#19433#19441regiongenotypes
20226362178665209708#2011#2029regiongenotypes
20241355800714140022#3496#3500regiongenotypes
20141295619913073733#3484#3487regiongenotypes
19953538497035995970#4782#4787regiongenotypes
19864508428945708756#5968#5976regiongenotypes
198251111974711412761#19670#19675regiongenotypes
19741314669613304172#3489#3492regiongenotypes
19743108797932042029#3678#3686regiongenotypes
1972440024435179711#18963#18968regiongenotypes
197251206497812665425#19683#19690regiongenotypes
19641307373313146696#3487#3489regiongenotypes
19641339205913558007#3494#3496regiongenotypes
19663567934736590724#5887#5896regiongenotypes
19625962096610160224#19651#19654regiongenotypes
196251016022410399713#19654#19657regiongenotypes
196251039971310856776#19657#19663regiongenotypes
196251086430210931766#19664#19666regiongenotypes
196251093176611051524#19666#19668regiongenotypes
196251141276111821186#19675#19680regiongenotypes
196251182945812064978#19681#19683regiongenotypes
196372648338826585762#25580#25583regiongenotypes
19554699003047460682#4922#4929regiongenotypes
19416173884462703625#698#708regiongenotypes
19427017922070702292#2084#2088regiongenotypes
194586717249603848#4436#4445regiongenotypes
19484527558245582615#7823#7826regiongenotypes
194342346283024272385#24296#24309regiongenotypes
194361325750213742937#25056#25062regiongenotypes
19315515989355601045#611#616regiongenotypes
19216313536864169748#711#716regiongenotypes
192243843443839388088#19449#19462regiongenotypes
192361294139713257502#25050#25056regiongenotypes
192372591523126140552#25571#25573regiongenotypes
19115546755655721053#614#619regiongenotypes
19116382969564309663#714#717regiongenotypes
19126961034270179220#2076#2084regiongenotypes
19154763012248018522#4931#4935regiongenotypes
1912232591873583010#17517#17521regiongenotypes
19063544993435650404#5881#5886regiongenotypes
1902235830104439679#17521#17529regiongenotypes
18964138744841942601#5948#5952regiongenotypes
189133205577432231330#11629#11634regiongenotypes
189163922613940162915#13886#13895regiongenotypes
189225039431350562423#18024#18027regiongenotypes
189372614055226483388#25573#25580regiongenotypes
18826899884569610342#2072#2076regiongenotypes
188135210115152675362#11889#11892regiongenotypes
188372684593726927992#25586#25589regiongenotypes
18726509154165487595#2027#2032regiongenotypes
18751022619010574896#4453#4458regiongenotypes
187102340387124048734#9024#9032regiongenotypes
187133223133032412417#11634#11638regiongenotypes
187222221350323338214#17719#17731regiongenotypes
187225056242350696333#18027#18029regiongenotypes
187251328219913469369#19701#19704regiongenotypes
187372658576226845937#25583#25586regiongenotypes
18653608187437128092#4788#4800regiongenotypes
18516955818071034177#764#779regiongenotypes
18564181689742020965#5951#5953regiongenotypes
185224988000549945180#18014#18016regiongenotypes
185372898985429412203#25624#25633regiongenotypes
18451081778611179986#4463#4467regiongenotypes
184956025707842960#8198#8212regiongenotypes
1842451797115306144#18968#18970regiongenotypes
184361374293714040409#25062#25065regiongenotypes
18343077993931050017#3674#3677regiongenotypes
18343204202932463712#3686#3690regiongenotypes
18347186691672498908#4139#4147regiongenotypes
183132293759223487992#11490#11495regiongenotypes
183201751014118886469#16341#16353regiongenotypes
1832244900764576920#17530#17532regiongenotypes
183225001290450244596#18018#18022regiongenotypes
183342427238524504688#24309#24314regiongenotypes
183372825558228553158#25611#25617regiongenotypes
18241481685015180516#3506#3512regiongenotypes
182759767526917459#6428#6439regiongenotypes
1821253865876897931#10455#10468regiongenotypes
182151393663914897554#12849#12855regiongenotypes
182151492288415062251#12856#12859regiongenotypes
182225021939750322326#18021#18023regiongenotypes
18116430966365014928#717#720regiongenotypes
18127057100370963423#2087#2092regiongenotypes
18143061305830702458#3670#3672regiongenotypes
18147412142074657367#4168#4176regiongenotypes
181151506225115116137#12859#12861regiongenotypes
181152415682824693515#12949#12954regiongenotypes
181282272457723339732#21484#21489regiongenotypes
181293386010334201237#22123#22127regiongenotypes
181372873002228989854#25621#25624regiongenotypes
1805960384810161015#4445#4451regiongenotypes
18051094540911680172#4465#4474regiongenotypes
18053712809237406702#4800#4803regiongenotypes
18053740670237921975#4803#4805regiongenotypes
18057991162881481856#5340#5348regiongenotypes
18084505255945204995#7818#7820regiongenotypes
180135475821256183842#11909#11924regiongenotypes
180225067278650831663#18028#18031regiongenotypes
180293462593034902005#22135#22140regiongenotypes
17951205831912379889#4479#4482regiongenotypes
17993220016032890933#8446#8454regiongenotypes
179122243795022485305#10663#10665regiongenotypes
179133123447431500024#11612#11618regiongenotypes
179135346759754758212#11898#11909regiongenotypes
179172037861221230021#14406#14418regiongenotypes
179282282882323652227#21486#21492regiongenotypes
179293480925235156438#22138#22144regiongenotypes
179293515643835691337#22144#22151regiongenotypes
17841414002214816850#3500#3506regiongenotypes
17851195487412058319#4477#4479regiongenotypes
17884558261546350788#7826#7833regiongenotypes
1781939642875746928#15529#15542regiongenotypes
178205301072553806203#16782#16792regiongenotypes
178361240633812502872#25046#25048regiongenotypes
178372855315828632593#25617#25620regiongenotypes
17747399937474121420#4166#4168regiongenotypes
17754566144246072535#4907#4911regiongenotypes
17793289093333305226#8454#8457regiongenotypes
177101161633012248197#8913#8919regiongenotypes
1771247133925063696#10449#10452regiongenotypes
1771250636965386587#10452#10455regiongenotypes
1771965996317047983#15544#15549regiongenotypes
177372690985426980889#25588#25590regiongenotypes
17615560104555806706#616#620regiongenotypes
17619597776996907259#1093#1101regiongenotypes
17691976298822617041#8329#8344regiongenotypes
17693299453333552225#8455#8460regiongenotypes
176101039331810879097#8894#8901regiongenotypes
176101208260112368783#8917#8921regiongenotypes
176151358539513936639#12845#12849regiongenotypes
176214140843142275287#17341#17352regiongenotypes
176234042598141217453#18734#18747regiongenotypes
176264004328041127711#20693#20705regiongenotypes
176282523100825891851#21515#21522regiongenotypes
176342450468824619727#24314#24316regiongenotypes
176361180785512084033#25036#25039regiongenotypes
176361936994819639939#25121#25124regiongenotypes
17526838417268998845#2065#2072regiongenotypes
17544122373941486937#3795#3801regiongenotypes
17554523049445661442#4901#4907regiongenotypes
17584916042149484623#7877#7881regiongenotypes
175101101720811256796#8904#8907regiongenotypes
175164016291540655660#13895#13904regiongenotypes
175202003563420396381#16365#16372regiongenotypes
175283130048131543496#21588#21591regiongenotypes
175293420123734271896#22127#22130regiongenotypes
175293435221034625930#22131#22135regiongenotypes
17432335115824112831#2481#2487regiongenotypes
174122227667422437950#10661#10663regiongenotypes
174161419038414862812#13574#13581regiongenotypes
174243708786537386441#19431#19433regiongenotypes
174263995472140043280#20691#20693regiongenotypes
174293426469634352210#22129#22131regiongenotypes
174342461972724848449#24316#24319regiongenotypes
174372698088927240275#25590#25594regiongenotypes
173259727118932343#1378#1390regiongenotypes
17326520970865563140#2029#2034regiongenotypes
17343026722430560504#3665#3668regiongenotypes
17343056050430613058#3668#3670regiongenotypes
17361440854314807396#5620#5624regiongenotypes
173983878858789349#8218#8222regiongenotypes
17392261704122832737#8344#8348regiongenotypes
17396278742262850710#8809#8811regiongenotypes
173152134669022077933#12915#12923regiongenotypes
173152494956925556599#12961#12968regiongenotypes
173201972212719979247#16362#16364regiongenotypes
173224466032045099215#17948#17952regiongenotypes
173342464917725087515#24317#24321regiongenotypes
17244056356841093924#3781#3791regiongenotypes
17251280855313516566#4488#4494regiongenotypes
17257881491579612824#5327#5337regiongenotypes
17296208031062132027#8799#8801regiongenotypes
172164163483942272257#13912#13916regiongenotypes
172181807715818358166#15102#15106regiongenotypes
172222333821423490792#17731#17733regiongenotypes
172251307768813194541#19697#19699regiongenotypes
17132255622923146400#2474#2480regiongenotypes
17147457520674954845#4175#4178regiongenotypes
17196151847462080310#8792#8799regiongenotypes
171132358316423706280#11498#11501regiongenotypes
171161448725514908985#13578#13582regiongenotypes
171164227225742383414#13916#13918regiongenotypes
171224509921545566263#17952#17957regiongenotypes
171251269820412917997#19691#19694regiongenotypes
171283513022035435799#21645#21651regiongenotypes
17022137713321650965#1540#1543regiongenotypes
17034037444240671896#2649#2655regiongenotypes
17044148693741675745#3801#3805regiongenotypes
17051168017211954874#4474#4477regiongenotypes
17054604155246217490#4910#4912regiongenotypes
17077203509172489342#7210#7214regiongenotypes
17077248934272899861#7214#7220regiongenotypes
170164236188942523734#13917#13919regiongenotypes
170214125086341408431#17336#17341regiongenotypes
170222346394723569819#17732#17734regiongenotypes
170283459503134801243#21638#21641regiongenotypes
1703442299144795615#24057#24066regiongenotypes
170372486625025092584#25555#25557regiongenotypes
169101284194913520959#8925#8934regiongenotypes
169224556626345652679#17957#17960regiongenotypes
169234123551041860159#18748#18755regiongenotypes
169283482022935130220#21642#21645regiongenotypes
169342508751525170631#24321#24324regiongenotypes
169342527842025429019#24325#24328regiongenotypes
16832296400623351158#2478#2481regiongenotypes
16847501274275482630#4180#4184regiongenotypes
16854503586545230494#4897#4901regiongenotypes
16861461409415377854#5622#5631regiongenotypes
16863446277034874368#5868#5870regiongenotypes
16886456210464827059#8053#8059regiongenotypes
16896120853261392293#8787#8790regiongenotypes
168121777587718236555#10590#10597regiongenotypes
168122214841722276674#10658#10661regiongenotypes
168133150002431549297#11618#11620regiongenotypes
168214196098542657951#17349#17353regiongenotypes
168224595623446401928#17962#17966regiongenotypes
168251271194012925597#19692#19695regiongenotypes
168253194100932238364#19936#19943regiongenotypes
168282567098825925940#21519#21523regiongenotypes
168361969483419909223#25125#25129regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameJen2change name
analysis_nameJen22_copychange name
analysis_descriptionTesting
max_block_length15
max_score210
user_loginLrybaczyk
lower_limit0
date2015-05-17 00:00:00
casesOFR1,OFR2,OFR3,OFR4,OSA1,OSA10,OSA11,OSA2,OSA3,OSA4,OSA5,OSA6,OSA8,OSA9
controlsAKC1,AKC10,AKC11,AKC12,AKC2,AKC4,AKC5,AKC6,AKC8,AKC9


retrieve homozyosity scores