Genome-wide homozygosity in Example cutis laxa - cutis laxa

max homozygosity score: 160
9832 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
16012117080995126921171rs953004rs722704regiongenotypes
144147599394083726679rs764187rs2124851regiongenotypes
14248896992589719368rs35491928rs1377290regiongenotypes
13512127672428128075482rs950591rs2013160regiongenotypes
132153922764447875273rs1368800rs718113regiongenotypes
13149300043799033860rs1826058rs1111541regiongenotypes
12825240142154284584rs1922192rs1363060regiongenotypes
narrow - use this when all patients are in the same family
16012117080995126921171rs953004rs722704regiongenotypes
144147599394083726679rs764187rs2124851regiongenotypes
14248896992589719368rs35491928rs1377290regiongenotypes
13512127672428128075482rs950591rs2013160regiongenotypes
132153922764447875273rs1368800rs718113regiongenotypes
13149300043799033860rs1826058rs1111541regiongenotypes
12825240142154284584rs1922192rs1363060regiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameExample cutis laxachange name
analysis_namecutis laxachange name
analysis_descriptionPubMed
max_block_length40
max_score160
allele_frequenciescontrols
user_loginexamples
cases8106,8107,8108,8109
controls405-5491,407-5803


retrieve homozyosity scores