Homozygosity on chromosome 2 in Example CS

194604223 bp

chromosome 2

195622951 bp

You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot.

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score	chr	from (bp)	to (bp)	from SNP	to SNP	build 36
broad - use this when you expect some genetic heterogeneity
258	2	194604223	195352047	rs1850595	rs801340	region	genotypes
narrow - use this when all patients are in the same family
258	2	194604223	195352047	rs1850595	rs801340	region	genotypes

create a BED file build 36
complete homozygous regions shown here
complete genes within these only exons	flanked by bases on each side.

create files for Alohomora
flanking region [bp]

Homozygosity on chromosome 2 in Example CS - standard analysis