Genome-wide homozygosity in canine_100_ped_homo_ys - Canine_100_ped_homozy_ys

max homozygosity score: 160
167989 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
16026948378070579965#2075#139247regiongenotypes
16027696081478226552#139559#139621regiongenotypes
1603753229312100284#140400#140659regiongenotypes
16031250169416066704#140687#64256regiongenotypes
16031673443517915305#140936#141007regiongenotypes
16031994297720974420#141135#28736regiongenotypes
16042126930123280209#146091#146202regiongenotypes
16047358883675458688#30784#30814regiongenotypes
160530378645556488#69296#150097regiongenotypes
160564386267502526#150146#150205regiongenotypes
16052102358022511417#150897#31369regiongenotypes
16055835144367952631#152795#153242regiongenotypes
16062654546228442168#155517#155599regiongenotypes
16063105898232701813#155725#155797regiongenotypes
16063422798146159294#155879#156467regiongenotypes
16064617218348039192#5981#156575regiongenotypes
16066433529766017823#157536#157621regiongenotypes
16072565641626856750#34047#159723regiongenotypes
16077689212677167501#7278#77299regiongenotypes
160830313254821131#162804#34907regiongenotypes
1608928230710200293#163131#163187regiongenotypes
16081071874411096721#163217#163237regiongenotypes
16081229176014075004#77876#35002regiongenotypes
16082520959326283832#164040#164106regiongenotypes
16083516750237693901#35173#164717regiongenotypes
16083897629040887918#164792#164888regiongenotypes
16091167034920430110#166934#167359regiongenotypes
160101475723115445695#169875#36948regiongenotypes
160103795347139202650#171010#171081regiongenotypes
160104990348259045568#171665#172170regiongenotypes
160106164207662488946#172312#37613regiongenotypes
160122351010327384349#177525#177750regiongenotypes
160123641514338480905#178270#178384regiongenotypes
160124356730643610379#178681#178685regiongenotypes
160125284317054563889#179204#10987regiongenotypes
160125543176356524094#179367#179437regiongenotypes
160125766688765022650#179513#88631regiongenotypes
16013384837118093370#180543#181426regiongenotypes
1601457527407169392#184105#12085regiongenotypes
160143423555941885695#185713#186128regiongenotypes
160152776179428811167#188605#188670regiongenotypes
160173359453734535470#195419#195465regiongenotypes
1601854305907824592#14991#197338regiongenotypes
160184058427141687622#199215#199273regiongenotypes
160193858385439562541#202156#202211regiongenotypes
160193962075941986929#101511#202339regiongenotypes
1602030067899743427#203196#203493regiongenotypes
1602230411816163861#208788#46893regiongenotypes
160232137771022712107#213208#213277regiongenotypes
160243281021633324606#216484#19373regiongenotypes
1602530556744903222#217355#217435regiongenotypes
1602555290247018885#217474#217572regiongenotypes
160274531705047092760#51700#51713regiongenotypes
160291743640222682085#227251#227568regiongenotypes
160292306508826778862#227591#227810regiongenotypes
1603042259085544192#228830#228904regiongenotypes
1603130094674086164#230848#22761regiongenotypes
1603143948655885665#230936#22777regiongenotypes
160311010883819687944#231297#22929regiongenotypes
160372892120530748208#56970#25659regiongenotypes
160382086101422517524#25933#57430regiongenotypes
158658701386832400#32567#154567regiongenotypes
15772077372821774828#159389#159450regiongenotypes
157122747277428703308#177755#177820regiongenotypes
156101955499720039109#170111#170135regiongenotypes
15586338975564323437#165959#35564regiongenotypes
1541930117754340151#200138#200208regiongenotypes
15275865594559769003#161393#161457regiongenotypes
15275984709860666640#161462#161509regiongenotypes
15051637767616850124#150657#150684regiongenotypes
1503730199494045838#242455#127554regiongenotypes
1483248890655748549#233125#54173regiongenotypes
14751860010219398790#150772#150817regiongenotypes
14762932384030216395#5799#155681regiongenotypes
1471891205989996030#197418#43857regiongenotypes
14523945950440503744#137663#137704regiongenotypes
14567691374177610032#158271#33622regiongenotypes
14439389077294246515#29911#145035regiongenotypes
144141171261412527316#40518#184441regiongenotypes
144252069102921584665#49679#49682regiongenotypes
14315377144154507021#132320#132364regiongenotypes
143101094454111998853#169690#169734regiongenotypes
14283267033633515975#7679#35151regiongenotypes
142125003609051212577#179058#179118regiongenotypes
1421438200165344456#184030#184083regiongenotypes
141106041550161341437#172245#37608regiongenotypes
14093745331737533691#168156#168163regiongenotypes
13923089935331687175#27778#137308regiongenotypes
139113545371535911874#174287#85918regiongenotypes
139212021972620792593#46266#207091regiongenotypes
13877774001278443644#7291#162515regiongenotypes
1371101408174102397881#134787#27252regiongenotypes
13793240443633136942#167903#167944regiongenotypes
136253921018539877701#219308#20059regiongenotypes
13519897351199327208#60016#60025regiongenotypes
13574834777149071257#160843#34337regiongenotypes
135262851153930198596#221310#221361regiongenotypes
13413757190938234552#131436#131469regiongenotypes
13415527031756114246#132400#132444regiongenotypes
13462854828629236525#155604#5797regiongenotypes
13373941861440226810#160398#160446regiongenotypes
132451089495785078#145180#145225regiongenotypes
13214997261410738431#12105#184345regiongenotypes
13127608819676847874#28353#139554regiongenotypes
131232811985828849590#18560#213634regiongenotypes
13073100897431759110#159931#159973regiongenotypes
1301960422686931631#200291#15546regiongenotypes
130261755740618020852#220819#220845regiongenotypes
12924129666041878501#1763#1771regiongenotypes
12926629865866796723#28187#28212regiongenotypes
129274736140447940856#224377#21240regiongenotypes
1282578132468557417#49469#217651regiongenotypes
128274457005445103299#224237#51690regiongenotypes
1283077404018642075#229035#229081regiongenotypes
narrow - use this when all patients are in the same family
16026948378070579965#2075#139247regiongenotypes
16027696081478226552#139559#139621regiongenotypes
1603753229312100284#140400#140659regiongenotypes
16031250169416066704#140687#64256regiongenotypes
16031673443517915305#140936#141007regiongenotypes
16031994297720974420#141135#28736regiongenotypes
16042126930123280209#146091#146202regiongenotypes
16047358883675458688#30784#30814regiongenotypes
160530378645556488#69296#150097regiongenotypes
160564386267502526#150146#150205regiongenotypes
16052102358022511417#150897#31369regiongenotypes
16055835144367952631#152795#153242regiongenotypes
16062654546228442168#155517#155599regiongenotypes
16063105898232701813#155725#155797regiongenotypes
16063422798146159294#155879#156467regiongenotypes
16064617218348039192#5981#156575regiongenotypes
16066433529766017823#157536#157621regiongenotypes
16072565641626856750#34047#159723regiongenotypes
16077689212677167501#7278#77299regiongenotypes
160830313254821131#162804#34907regiongenotypes
1608928230710200293#163131#163187regiongenotypes
16081071874411096721#163217#163237regiongenotypes
16081229176014075004#77876#35002regiongenotypes
16082520959326283832#164040#164106regiongenotypes
16083516750237693901#35173#164717regiongenotypes
16083897629040887918#164792#164888regiongenotypes
16091167034920430110#166934#167359regiongenotypes
160101475723115445695#169875#36948regiongenotypes
160103795347139202650#171010#171081regiongenotypes
160104990348259045568#171665#172170regiongenotypes
160106164207662488946#172312#37613regiongenotypes
160122351010327384349#177525#177750regiongenotypes
160123641514338480905#178270#178384regiongenotypes
160124356730643610379#178681#178685regiongenotypes
160125284317054563889#179204#10987regiongenotypes
160125543176356524094#179367#179437regiongenotypes
160125766688765022650#179513#88631regiongenotypes
16013384837118093370#180543#181426regiongenotypes
1601457527407169392#184105#12085regiongenotypes
160143423555941885695#185713#186128regiongenotypes
160152776179428811167#188605#188670regiongenotypes
160173359453734535470#195419#195465regiongenotypes
1601854305907824592#14991#197338regiongenotypes
160184058427141687622#199215#199273regiongenotypes
160193858385439562541#202156#202211regiongenotypes
160193962075941986929#101511#202339regiongenotypes
1602030067899743427#203196#203493regiongenotypes
1602230411816163861#208788#46893regiongenotypes
160232137771022712107#213208#213277regiongenotypes
160243281021633324606#216484#19373regiongenotypes
1602530556744903222#217355#217435regiongenotypes
1602555290247018885#217474#217572regiongenotypes
160274531705047092760#51700#51713regiongenotypes
160291743640222682085#227251#227568regiongenotypes
160292306508826778862#227591#227810regiongenotypes
1603042259085544192#228830#228904regiongenotypes
1603130094674086164#230848#22761regiongenotypes
1603143948655885665#230936#22777regiongenotypes
160311010883819687944#231297#22929regiongenotypes
160372892120530748208#56970#25659regiongenotypes
160382086101422517524#25933#57430regiongenotypes
158658701386832400#32567#154567regiongenotypes
15772077372821774828#159389#159450regiongenotypes
157122747277428703308#177755#177820regiongenotypes
156101955499720039109#170111#170135regiongenotypes
15586338975564323437#165959#35564regiongenotypes
1541930117754340151#200138#200208regiongenotypes
15275865594559769003#161393#161457regiongenotypes
15275984709860666640#161462#161509regiongenotypes
15051637767616850124#150657#150684regiongenotypes
1503730199494045838#242455#127554regiongenotypes
1483248890655748549#233125#54173regiongenotypes
14751860010219398790#150772#150817regiongenotypes
14762932384030216395#5799#155681regiongenotypes
1471891205989996030#197418#43857regiongenotypes
14523945950440503744#137663#137704regiongenotypes
14567691374177610032#158271#33622regiongenotypes
14439389077294246515#29911#145035regiongenotypes
144141171261412527316#40518#184441regiongenotypes
144252069102921584665#49679#49682regiongenotypes
14315377144154507021#132320#132364regiongenotypes
143101094454111998853#169690#169734regiongenotypes
14283267033633515975#7679#35151regiongenotypes
142125003609051212577#179058#179118regiongenotypes
1421438200165344456#184030#184083regiongenotypes
141106041550161341437#172245#37608regiongenotypes
14093745331737533691#168156#168163regiongenotypes
13923089935331687175#27778#137308regiongenotypes
139113545371535911874#174287#85918regiongenotypes
139212021972620792593#46266#207091regiongenotypes
13877774001278443644#7291#162515regiongenotypes
1371101408174102397881#134787#27252regiongenotypes
13793240443633136942#167903#167944regiongenotypes
136253921018539877701#219308#20059regiongenotypes
13519897351199327208#60016#60025regiongenotypes
13574834777149071257#160843#34337regiongenotypes
135262851153930198596#221310#221361regiongenotypes
13413757190938234552#131436#131469regiongenotypes
13415527031756114246#132400#132444regiongenotypes
13462854828629236525#155604#5797regiongenotypes
13373941861440226810#160398#160446regiongenotypes
132451089495785078#145180#145225regiongenotypes
13214997261410738431#12105#184345regiongenotypes
13127608819676847874#28353#139554regiongenotypes
131232811985828849590#18560#213634regiongenotypes
13073100897431759110#159931#159973regiongenotypes
1301960422686931631#200291#15546regiongenotypes
130261755740618020852#220819#220845regiongenotypes
12924129666041878501#1763#1771regiongenotypes
12926629865866796723#28187#28212regiongenotypes
129274736140447940856#224377#21240regiongenotypes
1282578132468557417#49469#217651regiongenotypes
128274457005445103299#224237#51690regiongenotypes
1283077404018642075#229035#229081regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_namecanine_100_ped_homo_yschange name
analysis_nameCanine_100_ped_homozy_yschange name
analysis_descriptionCase control analysis canine 100 ped
max_block_length80
max_score160
allele_frequenciescontrols
user_loginahramd1
homogeneity_requiredhomogeneity required
lower_limit0
date2012-02-06 00:00:00
exclusion_length-1
cases100-002,100-017
controls100-001,100-013


retrieve homozyosity scores