Genome-wide homozygosity in Canine_hom_map_27_3_12 - 320_ped_homo_mapping

max homozygosity score: 102
95333 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
1021931031554340151#200144#200208regiongenotypes
narrow - use this when all patients are in the same family
1021931031554340151#200144#200208regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_name320_ped_homo_mappingchange name
analysis_descriptionanalysis of 320 pedigree members homoz mzpping_7
max_block_length80
max_score102
user_loginahramd
homogeneity_requiredhomogeneity required
lower_limit0
date2012-03-29 00:00:00
exclusion_length1000
cases320-001,320-003,320-005
controls320-006,320-007,320-008,350-004


retrieve homozyosity scores