Genome-wide homozygosity in Canine_hom_map_27_3_12 - 320_ped_homo_mapping_3

max homozygosity score: 240
76242 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
2406380781317706161#5487#155103regiongenotypes
24062623097926506128#73707#155515regiongenotypes
2407300031610264522#158468#6480regiongenotypes
24071780225018448806#159244#33923regiongenotypes
240104970370253150946#171651#171823regiongenotypes
240116281400865137013#86387#175848regiongenotypes
240176220993367027457#196842#197087regiongenotypes
240191525310419648099#200843#44669regiongenotypes
240331403075616034267#235855#235983regiongenotypes
240362677303227315463#242021#242050regiongenotypes
2403733469878022187#127542#242748regiongenotypes
240371964353123048619#243362#56843regiongenotypes
240372371567825550987#25537#243727regiongenotypes
22532304666426796016#141329#141526regiongenotypes
21495666014457281932#169020#169046regiongenotypes
21362732335729356374#73719#32966regiongenotypes
213214147668142114382#46620#208133regiongenotypes
21228236083383009422#139846#63644regiongenotypes
211211743902318246295#206904#206952regiongenotypes
209930272084177519#166574#166629regiongenotypes
20553455205136817650#4774#70470regiongenotypes
197104638670148261183#171459#9310regiongenotypes
1921931031554392773#200144#200211regiongenotypes
narrow - use this when all patients are in the same family
2406380781317706161#5487#155103regiongenotypes
24062623097926506128#73707#155515regiongenotypes
2407300031610264522#158468#6480regiongenotypes
24071780225018448806#159244#33923regiongenotypes
240104970370253150946#171651#171823regiongenotypes
240116281400865137013#86387#175848regiongenotypes
240176220993367027457#196842#197087regiongenotypes
240191525310419648099#200843#44669regiongenotypes
240331403075616034267#235855#235983regiongenotypes
240362677303227315463#242021#242050regiongenotypes
2403733469878022187#127542#242748regiongenotypes
240371964353123048619#243362#56843regiongenotypes
240372371567825550987#25537#243727regiongenotypes
22532304666426796016#141329#141526regiongenotypes
21495666014457281932#169020#169046regiongenotypes
21362732335729356374#73719#32966regiongenotypes
213214147668142114382#46620#208133regiongenotypes
21228236083383009422#139846#63644regiongenotypes
211211743902318246295#206904#206952regiongenotypes
209930272084177519#166574#166629regiongenotypes
20553455205136817650#4774#70470regiongenotypes
197104638670148261183#171459#9310regiongenotypes
1921931031554392773#200144#200211regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_name320_ped_homo_mapping_3change name
analysis_descriptionanalysis of 320 pedigree members homoz mzpping_7
max_block_length80
max_score240
user_loginahramd
lower_limit0
date2012-03-29 00:00:00
cases320-001,320-003,320-005
controls320-006,320-007,320-008,350-004


retrieve homozyosity scores