Genome-wide homozygosity in Canine_hom_map_27_3_12 - 300_homo_mapping_ped_2

max homozygosity score: 45
42100 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
4531554953144884277#28686#142425regiongenotypes
4546625377267189527#148486#30725regiongenotypes
458427815712010990#162864#77873regiongenotypes
4581309309226312905#7484#164108regiongenotypes
4585858544760463783#7977#165831regiongenotypes
45152929473430817387#188699#188795regiongenotypes
45153207209235530913#188878#41409regiongenotypes
45203019004231717974#204585#204667regiongenotypes
45211324537733274379#206677#207707regiongenotypes
45221913672256655099#209696#211941regiongenotypes
45234042598140838806#18734#214225regiongenotypes
45261268272315855171#220583#220737regiongenotypes
45272770661729953532#223344#223456regiongenotypes
45303672635743194068#53505#230847regiongenotypes
45371820296020654480#127889#127945regiongenotypes
42153143478332049363#188837#188876regiongenotypes
38193598345136111921#15884#202004regiongenotypes
38273015539030346029#223465#223479regiongenotypes
narrow - use this when all patients are in the same family
4531554953144884277#28686#142425regiongenotypes
4546625377267189527#148486#30725regiongenotypes
458427815712010990#162864#77873regiongenotypes
4581309309226312905#7484#164108regiongenotypes
4585858544760463783#7977#165831regiongenotypes
45152929473430817387#188699#188795regiongenotypes
45153207209235530913#188878#41409regiongenotypes
45203019004231717974#204585#204667regiongenotypes
45211324537733274379#206677#207707regiongenotypes
45221913672256655099#209696#211941regiongenotypes
45234042598140838806#18734#214225regiongenotypes
45261268272315855171#220583#220737regiongenotypes
45272770661729953532#223344#223456regiongenotypes
45303672635743194068#53505#230847regiongenotypes
45371820296020654480#127889#127945regiongenotypes
42153143478332049363#188837#188876regiongenotypes
38193598345136111921#15884#202004regiongenotypes
38273015539030346029#223465#223479regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_name300_homo_mapping_ped_2change name
analysis_description300 pedigree mapping
max_block_length15
max_score45
user_loginahramd
lower_limit0
date2012-03-30 00:00:00
cases300-007,300-008,300-032
controls300-006


retrieve homozyosity scores