Genome-wide homozygosity in Canine_hom_map_27_3_12 - 325_ped_homo_mapping-2

max homozygosity score: 80
58744 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
801609381812815252#129670#130039regiongenotypes
8017796387585188698#133614#133961regiongenotypes
802925825720381004#136175#1529regiongenotypes
8023707934642445307#137561#137809regiongenotypes
8025103193169569939#1873#139185regiongenotypes
803330495062441438#140160#29295regiongenotypes
8041937162925333708#145977#67436regiongenotypes
8043222291834642506#146651#146797regiongenotypes
8045943509362483735#148099#148278regiongenotypes
8047161387379273252#30761#149213regiongenotypes
8054874633651942302#152319#70910regiongenotypes
8055928642968303296#152835#71733regiongenotypes
806380781317706161#5487#155103regiongenotypes
8067154376976709614#157954#158259regiongenotypes
8076056141164503728#161502#161745regiongenotypes
808317513514075004#77657#35002regiongenotypes
8081806039723351858#163617#163935regiongenotypes
80103921538943772450#171082#171322regiongenotypes
80117514759377415697#10394#10424regiongenotypes
80122349804843402955#10683#88249regiongenotypes
80134249406048072175#182613#11840regiongenotypes
80136129060066055997#183724#12053regiongenotypes
80165095293955768957#42486#193549regiongenotypes
8017460638916771691#193957#194561regiongenotypes
80173778792647266782#195639#196104regiongenotypes
80176117731967068290#196800#14977regiongenotypes
8018305649116819375#197103#197845regiongenotypes
80181942568929977135#43970#198581regiongenotypes
80184541118450605330#199447#199718regiongenotypes
80185259716357494297#199818#44558regiongenotypes
80202330003627246486#204231#204431regiongenotypes
80202746139231851278#204441#16559regiongenotypes
80211343336015811190#16964#46216regiongenotypes
80212080656523178919#46276#46326regiongenotypes
80212603817627880944#207366#46374regiongenotypes
80212789530032047352#207463#207650regiongenotypes
80215079565553920947#208616#208783regiongenotypes
80223719436040751424#210788#211030regiongenotypes
8024826809312426113#109253#215473regiongenotypes
80255044338152824671#219900#50274regiongenotypes
8026601314613134643#220259#220609regiongenotypes
80261815290531703666#20449#221420regiongenotypes
80263180231236668847#50876#221666regiongenotypes
802742100009616767#222026#222307regiongenotypes
8027965058615546166#51220#222647regiongenotypes
80273288041437251099#223633#223881regiongenotypes
8028306883421565968#224447#51989regiongenotypes
80283302252536677252#225911#52319regiongenotypes
80293045830133860103#228026#22123regiongenotypes
8030300126614944200#228780#229366regiongenotypes
80301724061123943076#229474#229855regiongenotypes
80323662774441655244#234945#235220regiongenotypes
8033510022015264240#235333#23793regiongenotypes
80331740027920229075#236059#54745regiongenotypes
80332422247928813989#123647#236659regiongenotypes
80332902487833857304#23986#24036regiongenotypes
8035450268310732055#239396#125976regiongenotypes
80352016412523317552#240203#56076regiongenotypes
80362295264625590664#25165#241945regiongenotypes
80371820296027469672#127889#56932regiongenotypes
8038305469518134678#244093#244930regiongenotypes
7837468668378481536#143904#144109regiongenotypes
78194550041551957900#45051#202941regiongenotypes
77381839451422960242#244946#245170regiongenotypes
762030190456648402#203197#102055regiongenotypes
7294985601153245168#168707#36578regiongenotypes
721930390145523823#200140#15541regiongenotypes
711121160037123376961#135688#135819regiongenotypes
7127280044375679651#139364#139499regiongenotypes
70161981930322488267#191668#191786regiongenotypes
70272361678130454537#223106#21044regiongenotypes
69135252764655672613#183174#183367regiongenotypes
68233648169439004247#214007#48177regiongenotypes
67312538233528003034#232193#232327regiongenotypes
6663491176238687902#155904#156094regiongenotypes
narrow - use this when all patients are in the same family
801609381812815252#129670#130039regiongenotypes
8017796387585188698#133614#133961regiongenotypes
802925825720381004#136175#1529regiongenotypes
8023707934642445307#137561#137809regiongenotypes
8025103193169569939#1873#139185regiongenotypes
803330495062441438#140160#29295regiongenotypes
8041937162925333708#145977#67436regiongenotypes
8043222291834642506#146651#146797regiongenotypes
8045943509362483735#148099#148278regiongenotypes
8047161387379273252#30761#149213regiongenotypes
8054874633651942302#152319#70910regiongenotypes
8055928642968303296#152835#71733regiongenotypes
806380781317706161#5487#155103regiongenotypes
8067154376976709614#157954#158259regiongenotypes
8076056141164503728#161502#161745regiongenotypes
808317513514075004#77657#35002regiongenotypes
8081806039723351858#163617#163935regiongenotypes
80103921538943772450#171082#171322regiongenotypes
80117514759377415697#10394#10424regiongenotypes
80122349804843402955#10683#88249regiongenotypes
80134249406048072175#182613#11840regiongenotypes
80136129060066055997#183724#12053regiongenotypes
80165095293955768957#42486#193549regiongenotypes
8017460638916771691#193957#194561regiongenotypes
80173778792647266782#195639#196104regiongenotypes
80176117731967068290#196800#14977regiongenotypes
8018305649116819375#197103#197845regiongenotypes
80181942568929977135#43970#198581regiongenotypes
80184541118450605330#199447#199718regiongenotypes
80185259716357494297#199818#44558regiongenotypes
80202330003627246486#204231#204431regiongenotypes
80202746139231851278#204441#16559regiongenotypes
80211343336015811190#16964#46216regiongenotypes
80212080656523178919#46276#46326regiongenotypes
80212603817627880944#207366#46374regiongenotypes
80212789530032047352#207463#207650regiongenotypes
80215079565553920947#208616#208783regiongenotypes
80223719436040751424#210788#211030regiongenotypes
8024826809312426113#109253#215473regiongenotypes
80255044338152824671#219900#50274regiongenotypes
8026601314613134643#220259#220609regiongenotypes
80261815290531703666#20449#221420regiongenotypes
80263180231236668847#50876#221666regiongenotypes
802742100009616767#222026#222307regiongenotypes
8027965058615546166#51220#222647regiongenotypes
80273288041437251099#223633#223881regiongenotypes
8028306883421565968#224447#51989regiongenotypes
80283302252536677252#225911#52319regiongenotypes
80293045830133860103#228026#22123regiongenotypes
8030300126614944200#228780#229366regiongenotypes
80301724061123943076#229474#229855regiongenotypes
80323662774441655244#234945#235220regiongenotypes
8033510022015264240#235333#23793regiongenotypes
80331740027920229075#236059#54745regiongenotypes
80332422247928813989#123647#236659regiongenotypes
80332902487833857304#23986#24036regiongenotypes
8035450268310732055#239396#125976regiongenotypes
80352016412523317552#240203#56076regiongenotypes
80362295264625590664#25165#241945regiongenotypes
80371820296027469672#127889#56932regiongenotypes
8038305469518134678#244093#244930regiongenotypes
7837468668378481536#143904#144109regiongenotypes
78194550041551957900#45051#202941regiongenotypes
77381839451422960242#244946#245170regiongenotypes
762030190456648402#203197#102055regiongenotypes
7294985601153245168#168707#36578regiongenotypes
721930390145523823#200140#15541regiongenotypes
711121160037123376961#135688#135819regiongenotypes
7127280044375679651#139364#139499regiongenotypes
70161981930322488267#191668#191786regiongenotypes
70272361678130454537#223106#21044regiongenotypes
69135252764655672613#183174#183367regiongenotypes
68233648169439004247#214007#48177regiongenotypes
67312538233528003034#232193#232327regiongenotypes
6663491176238687902#155904#156094regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_name325_ped_homo_mapping-2change name
analysis_description325 ped homozygosity mapping
max_block_length80
max_score80
user_loginahramd
lower_limit0
date2012-03-30 00:00:00
cases325-001
controls325-002,325-003,325-004


retrieve homozyosity scores