Genome-wide homozygosity in Canine_hom_map_27_3_12 - 325_ped_homo_mapping_copy

max homozygosity score: 26
102563 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
261030819335342778#82927#169432regiongenotypes
narrow - use this when all patients are in the same family
261030819335342778#82927#169432regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_name325_ped_homo_mapping_copychange name
analysis_description325 ped homozygosity mapping
max_block_length80
max_score26
user_loginahramd
homogeneity_requiredhomogeneity required
lower_limit0
date2012-03-30 00:00:00
exclusion_length250
cases325-001
controls325-002,325-003,325-004


retrieve homozyosity scores