Genome-wide homozygosity in Canine_hom_map_27_3_12 - sharp

max homozygosity score: 309
75897 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
309131999450821086465#39659#39685regiongenotypes
309132166950922792867#181607#181663regiongenotypes
288141171261413825122#40518#184529regiongenotypes
263242308197023118645#216012#216015regiongenotypes
25995990102760035477#36771#169164regiongenotypes
258141500083015588996#184593#184626regiongenotypes
2553274993978181992#233282#233318regiongenotypes
253212106245221420029#207106#46290regiongenotypes
252131841432618987345#181445#181478regiongenotypes
251142029187720495391#184899#184910regiongenotypes
2491435147113855158#184013#184032regiongenotypes
narrow - use this when all patients are in the same family
309131999450821086465#39659#39685regiongenotypes
309132166950922792867#181607#181663regiongenotypes
288141171261413825122#40518#184529regiongenotypes
263242308197023118645#216012#216015regiongenotypes
25995990102760035477#36771#169164regiongenotypes
258141500083015588996#184593#184626regiongenotypes
2553274993978181992#233282#233318regiongenotypes
253212106245221420029#207106#46290regiongenotypes
252131841432618987345#181445#181478regiongenotypes
251142029187720495391#184899#184910regiongenotypes
2491435147113855158#184013#184032regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCanine_hom_map_27_3_12change name
analysis_namesharpchange name
max_block_length80
max_score309
user_loginahramd
lower_limit0
date2014-05-20 00:00:00
cases100-001,100-002,100-013,100-017
controlsnone


retrieve homozyosity scores