Genome-wide homozygosity in CFS2 - CFS2_fam

max homozygosity score: 223
41630 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
22374871143749208360#51957#51973regiongenotypes
19945775814558495503#45529#45542regiongenotypes
182185686369257022464#22096#22100regiongenotypes
18133426786035084304#40452#40475regiongenotypes
18145870053658889420#45549#45554regiongenotypes
17942755086828333817#44771#44788regiongenotypes
17945865615358700536#45546#45549regiongenotypes
179185712568957299129#22106#22109regiongenotypes
narrow - use this when all patients are in the same family
22374871143749208360#51957#51973regiongenotypes
19945776512358474633#45530#45539regiongenotypes
18545839376858495503#45538#45542regiongenotypes
182185688941356990492#22097#22099regiongenotypes
18133468915034703671#40467#40469regiongenotypes
18145870053658889420#45549#45554regiongenotypes
181185688952557022464#22098#22100regiongenotypes
18033469807635084304#40468#40475regiongenotypes
17942755086828333817#44771#44788regiongenotypes
17945865615358700536#45546#45549regiongenotypes
179185712568957299129#22106#22109regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length15
max_score223
user_loginjncldwll1
lower_limit0
date2013-07-23 00:00:00
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores