Genome-wide homozygosity in Tutorial_VCF - 2 individuals affected_copy

max homozygosity score: 434
1169696 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
434153795460240030968n/an/aregiongenotypes
narrow - use this when all patients are in the same family
434153795460240030968n/an/aregiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameTutorial_VCFchange name
analysis_name2 individuals affected_copychange name
max_block_length250
max_score434
allele_frequenciescontrols
user_logintutorial
vcf_build37
lower_limit0
date2013-05-29 00:00:00
casesSample1,Sample2
controlsSample3,Sample4


retrieve homozyosity scores
new & highly experimental: show this for build 36