HomozygosityMapper
Mus musculus
Upload genotypes
login
(click RELOAD afterwards)
new project name
must
not
contain any characters except letters, digits, underscores - spaces are
not
allowed
You must not use patient names or initials.
A secret key for data access will be issued during the upload process. There is
absolutely no way
for you to retrieve your data without this key.
add to existing project
impossible for VCF files
chip
Affymetrix: Mouse diversity
Affymetrix: TG_Mouse_5KPanel
Illumina: Mouse_LD_Linkage
Illumina: Mouse_MD_Linkage
VCF file
genotype file
filename must
not
contain any characters except letters, digits, & underscores - spaces are
not
allowed
this file must be plain text and can be zipped or gzipped -
formats & sample files
Illumina file with real genotypes, coded as A/C/G/T - due to the conversion into A/B genotypes, this is relatively slow.
VCF upload
minimum coverage
use...
only known variants
only variations from RefSeq
known variants plus variations from RefSeq
only relevant for VCF files - genotypes with a coverage below this value are neglected
you
must
set this value to 0 unless your VCF files have the
DP flag in the FORMAT(!) column
help
tutorial
Data created without being logged in will be deleted after 2 days.
Adding new genotypes to an existing private project is only possible with a user account.
Project and file names
must not
contain any other characters than letters, digits and _.
There is no size limit for uploads but very large files (> 100 MB) are likely to cause server time-outs unless the connection is very fast.
Please zip or gzip your files to accelerate data upload - especially files larger than 10 MB.
If you experience network time-outs anyway, either split your file into smaller parts or write us an e-mail - we will certainly find a solution to upload your data.
Never
press reload after submitting (unless another page is displayed).