HomozygosityMapper

Ovis aries

Upload genotypes

<A href="http://commons.wikimedia.org/wiki/File:Sheep_in_gray.svg">Michał Pecyna</A>

new project name

must not contain any characters except letters, digits, underscores - spaces are not allowed
You must not use patient names or initials.
A secret key for data access will be issued during the upload process. There is absolutely no way for you to retrieve your data without this key.

add to existing project

impossible for VCF files

chip

genotype file

filename must not contain any characters except letters, digits, & underscores - spaces are not allowed
this file must be plain text and can be zipped or gzipped - formats & sample files
Illumina file with real genotypes, coded as A/C/G/T - due to the conversion into A/B genotypes, this is relatively slow.

VCF upload

minimum coverage		use...
only relevant for VCF files - genotypes with a coverage below this value are neglected you must set this value to 0 unless your VCF files have the DP flag in the FORMAT(!) column

help tutorial

Data created without being logged in will be deleted after 2 days.
Adding new genotypes to an existing private project is only possible with a user account.
Project and file names must not contain any other characters than letters, digits and _.
There is no size limit for uploads but very large files (> 100 MB) are likely to cause server time-outs unless the connection is very fast.
Please zip or gzip your files to accelerate data upload - especially files larger than 10 MB.
If you experience network time-outs anyway, either split your file into smaller parts or write us an e-mail - we will certainly find a solution to upload your data.
Never press reload after submitting (unless another page is displayed).