HomozgosityMapper pedigree Login

Upload genotypes

New project name
Must not contain any characters except letters, digits, underscores - spaces are not allowed You must not use patient names or initials.
A secret key for data access will be issued during the upload process. There is absolutely no way for you to retrieve your data without this key.
Genotypes from
Choose SNP chip
Genotype file
Sample file (Affy Mapping50K_Hind240) Sample VCF file (genome version 37) AutozygosityMapper is primarily aimed at VCF files, we recommend using HomozygosityMapper instead. The filename must not contain any characters except letters, digits, & underscores - spaces are not allowed. This file must be plain text and can be zipped or gzipped - formats & sample files. There is no standard format for SNP array genotypes - should you experience problems with your file or miss the array in the drop-down menu, please send an email.
Minimum coverage
Genotypes with a coverage below this value are neglected. You must set this value to 0 unless your VCF file has the DP flag in the FORMAT(!) column.
Genome version
Enter the genome version you are using as integer (e.g. 37 or 38).
  • We do no longer allow sharing data with the public. Date uploaded without being logged in will be removed after 2 days.
  • Project and file names must not contain any other characters than letters, digits and _.
  • There is no size limit for uploads but very large files (> 100 MB) are likely to cause server time-outs unless the connection is very fast. Please zip or gzip your files to accelerate data upload - especially files larger than 10 MB.
  • If you experience network time-outs anyway, either split your file into smaller parts or write us an e-mail - we will certainly find a solution to upload your data.
  • Never press reload after submitting (unless another page is displayed).