HomozygosityMapper
Canis lupus
(Re)analyse your genotypes
project
Sharpeis_alldogs
Dogproject2
DogProject1
MW2
canine19
canine20
can19
GD13
GD11
GD1
GDN
a1
HZGDN
HZGDN17
HZGDN18
HZGDN21
HZ1GDN
HZGDN20
gdn266
gdn261
gdn264
gdn265
gdn26
canine_100_ped_homo_ys
Canine_hom_map_27_3_12
affecteds_350_320
jen444
Jen2
re-analyse
new
analysis name
analysis description
cases
controls
homogeneity
require genetic homogeneity
Checking this box will
only
detect regions in which
all
affected individuals are homozygous. Use this for searches within single families.
exclude homozygous stretches in controls >=
(recommended: )
Regions with the 'disease haplotype' in controls will be excluded when they are longer than this value. Use -1 if you don't want to use controls for region exclusion.
allele frequencies
none
from controls
HapMap: CEPH (European origin)
HapMap: Yoruba)
HapMap: HapMap: Han Chinese
HapMap: HapMap: Japanese
not possible for VCF-based genotypes
limit block length
leave empty to use standard settings for chip
only count blocks longer than
lower limit; default is 0 (i.e. every homozygous block is counted)
reset
help
tutorial