Genome-wide homozygosity in CFS2 - CFS_fam3

max homozygosity score: 795
41630 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
79574831494751944102#51954#52040regiongenotypes
narrow - use this when all patients are in the same family
79575104699651156489#52019#52023regiongenotypes
79575151921551835107#52036#52039regiongenotypes
79174871143749208360#51957#51973regiongenotypes
79175151576051519215#52033#52036regiongenotypes
78875152281951944102#52037#52040regiongenotypes
78174999898350381496#51995#51998regiongenotypes
78075020250650594329#51997#52010regiongenotypes
77275066408650851826#52014#52017regiongenotypes
71974987323849901427#51982#51985regiongenotypes
71274831494748711437#51954#51957regiongenotypes
71174980337549809742#51979#51981regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS_fam3change name
max_block_length500
max_score795
allele_frequenciescontrols
user_loginjncldwll1
lower_limit0
date2013-10-08 00:00:00
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores